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12-4931-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17903887 [Map]; Strand: w
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon4 (CDS)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (3UTR)
      • AT4G38170.1 - [+] show detail - FAR1-related sequence 9
        Distance: -671; Region: promoter
    Flanking Genome Sequence: 12-4931-1 - 5-prime edge 
    AGTCTAGCTG CTTGTCGGAA GTATGGGTGG GTAAAAAGCC CCTAGTCATT 
    CCACAAATAT GGAGGCCCCT AGTCAAAGGT CACATTTGAT GACAAAGAGA 
    TGGTTGATCG TTCTCTGCCT ATATAGTATG TACCTGTCAT ATAAAAATGA 
    GACCCCCTCT GCTCTCTCTT TTGGATGAGA TCAACCGTAT TTTAAACCGG 
    CCAAACTTGA AAGTTTTTTT TTGCTTCAAA TGCTCTTTCA AGTANAGTCC 
    CTTTTGTTAT TCACGTTTTG TAGCTATTCT ATTCTCTCTC CTTGGACTGG 
    NGTTTTTGTT CTTCGGTTTT TCCGATCAAA GTTGAATCAA NAANAAGTTC 
    GATATGTCCG TCTTCGCTGT TTCTTGTGGT TGCTTGTTGG GCTTCTGTGC 
    CTTTTTGATT TTTTCTATTT TGGGCCTGTG TGCCATGTTT TNGGCATTTC 
    TGCTTTGTTG GGCCTACGTG CCTTTTCNAG CCTTGTAGTT TTNTTTGTTT 
    AAAGCACTCA ATAATTGTTT GTTGACGGAC CAAAAAACTC AAATAGGCCC 
    GACTTAATTT ATTATTTTAA GGGCCCAAAA TTAAGGACTA GGCCTGCCTA 
    CCANTCCCAA CTNNCAACAT TGGTTATGGT AAACTAACAG CTTGCCGTTT 
    TATGTTNTAA AAACGGNAGG AAAGTGTAGG CTTAAATANA CAAACCCCGN 
    CCCGAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17903771 [Map]; Strand: w
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G38170.1 - [+] show detail - FAR1-related sequence 9
        Distance: -787; Region: promoter
    Flanking Genome Sequence: 12-4931-1 - 3-prime edge 
    GCTAGACTGC ATTGCTGCAT ATTCTGTTCT GCAGTTAGGC TAAGCAGACA 
    CTTCTTTTGC TTGTCGGTTG CTGCAATAAT CACAAGCCAA TAATGACACT 
    GACTTATCCA ACAACATATA CATCCCATTT TGATTGCAGT TGAATACCTG 
    AAAACACAGG AACCACTCTA TGGATATGCA CTTGATCGGG CCATGGTGGT 
    GGTTCTATCA TAATTAGGTG ATTTTCAAAA GGAAGTGTAG AATCCATGAT 
    AAACGAATGC ATAGTGAATA ATCGATGATA TCTGGAAGAA AACACTCTAT 
    TGATATCACA ATCACTCAAG GAAAAGCTCG TGCTAGAAAT TGGTGCACAA 
    GCTGAAAACA GCTTACAGAG AGAGCCTGAT GAAGGAAAAA ACTAGAGAGA 
    GATATAAAAG CTAGAAGCT

AT4G38160.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.3

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link
InterPro Scan - TAIR

AT4G38170.1

Model type
Protein coding
Short Description
FAR1-related sequence 9
Computational Description
FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR