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12-4954-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12809251 [Map]; Strand: w
      • AT2G30010.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 45
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 12-4954-1 - 5-prime edge 
    TTCCCGACAC TTGGAACCAA TTGTTTTATG CTGCTTTGTT GTACTGAAGA 
    TTTGATTAAC CAAGATCAAA CAAAATGTAT CTATTGAATT ATATAGTTTC 
    CTAATTTTTA TTTGTAAGTT CACTAAGTTG TTACNGTTTA ATCAAACATA 
    TAATTGTGAA GTTGAGGATC TTGTTACGTT TAATCAAACA TATAAGTTGT 
    TACGTTCACT AAGTTCACTA ATCCTAACTT TCAAACTTAT TTTGTCGAAT 
    CGAAAGGAAA AAACATTTGT AAATAAACAA CATTTTTCGA ACACTTAAAA 
    TAAAAAGGCC TATATATTGG GCATCAAGCT CCTCAATTTA GGCCCATAAA 
    AGATTACTAA AGGGTTTATC AATCCCAAGA AAAACGAGAA CAAAGAAAGA 
    TGTTTTGAAT ATCTACTATC TAGGTTATAG AACTACTTGT GGGAGTCTAT 
    GCAAGTACTC TTAATCGTCG CCGTGTTGCT AATAGGAATC TAAGGGCCTG 
    ACTGGTTTAA ACACAGCGGG TGCGGTTGCG GTTGCGGGAG TTTGCGGAAA 
    CGGGCGGTTG CGGTTTCAAG CGTTATCAAG TGTTTTGAAC GACTGGTTGA 
    GCGTTTGGTA ATAGGTGCGT TTGCGGGAGT TTTATGACTG ATAAACCAGC 
    GGGTGCGATA GTAATTAAAT AAAAATAACC NAAATAAATA TAATATATTA 
    CTATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12809135 [Map]; Strand: w
      • AT2G30010.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 45
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-4954-1 - 3-prime edge 
    GTCGGGAAGA CCCGGAAGAC ACCAATGGCT ACAATCAGAT GAACGGTCAG 
    GATTTCTTTT CAAAGAAGGG TTGAGATCTC CACTATATAT CGAAGGATGA 
    CCGTCGACAC GAAGAGCAGA GAGCATAGTT ATATCCATCA ATGAGACATG 
    AGACTTCATC TCTTTAACCA CGTCGTCTAT CACTTTCTTC TGGTTCACGT 
    ATGAACTTGT TGGATACGAT GTTCCACTAA ACGGTGTCGT TTGTCCGTAG 
    CAGCTTTTAC CTCCTTGAGT TATTGTTGAA GTTTTTGATC TTGAAGTCCA 
    CTCATTTGGG CTAACATCAC AAATAAAAGC ATATTGTTTT AGAGAAAAAA 
    ATAGAAGCAG GGAACAGTTT TATTAAAGAT TATAGGAATG GTAGGATACA 
    ACATTAATGG TTATGTTGGT GGCTATGTTT ATAGTATAAT CTTTTGCAAG 
    TTGCAATGAA GAGAAGCT

AT2G30010.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 45
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 45 (TBL45); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G58600.1); Has 1337 Blast hits to 1318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR