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Mutant Lines
12-4962-1

12-4962-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19344640 [Map]; Strand: w
- AT2G47090.2 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -299; Region: promoter
- AT2G47090.1 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -330; Region: promoter
- AT2G47110.1 - [+] show detail - ubiquitin 6
  Distance: 0; Region: exon1 (5UTR)
- AT2G47110.2 - [+] show detail - ubiquitin 6
  Distance: 0; Region: exon1 (5UTR)

CTTGATAAAC TNACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC TTTCTTCTCA CCACTTAAAG AATTTCCCCA 
GAAATTTTCT TCCGCCGTAA AAGCAAAAAA AGATGCAGAT CTTCGTGAAA 
ACCCTAACGG GGAAGACGAT CACTCTCGAG GTCGAGTCCT CTGACACCAT 
CGACAATGTC AAGGCCAAGA TCCAAGACAA GGAAGGAATC CCACCGGACC 
AGCAGCGATT GATTTTCGCC GGAAAGCAGC TCGAAGACGG ACGTACCTTA 
GCCGATTACA ACATCCAGAA GGAATCAACG CTTCACCTTG TCCTTCGTCT 
CCGTGGAGGT GCTAAGAAGA GGAAGAAGAA GACCTACACC AAGCCTAAGA 
AGATCAAGCA CAAGCACAAG AAGGTCAAGC TCGCTGTTCT TCAGTTCTAC 
AAGGTTGATG GTTCAGGTAA GGTTCAGCGT TTGAGGAAGG AGTGCCCTAA 
CGCAACCTGT GGTGCTGGGA CTTTCATGGC GAGTCATTTC GATCGTCACT 
ACTGTGGTAA GTGTGGTCTC ACCTACGTTT ACCAGAAAGA AGGAGCTCAG 
GAATGATTTT CATCTCGATC TCTATCATTT TGAATTGAAT ACTGCTTTTT 
TTTTGGAATT TGGAAGTTGT TTTTGGATGT TGNGGATCTT ATGTTGAACT 
TGTTNGAATT TCATATCTAG GTTTTTCTTA TGGATATTTT TATGCTCTTT 
ATTNGAATTA CTTTCAATCT TATTGC

3 prime edge [+] show sequence

Chromosome: 2; Position: 19344589 [Map]; Strand: w
- AT2G47090.2 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -248; Region: promoter
- AT2G47090.1 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -279; Region: promoter
- AT2G47110.1 - [+] show detail - ubiquitin 6
  Distance: -46; Region: promoter
- AT2G47110.2 - [+] show detail - ubiquitin 6
  Distance: -46; Region: promoter

TTTAAAAAGA GTAGTGGTTG AGAAACTAGG GTTTTGGAGC TCGCTTTTAC 
AATTACGTAA TTACCCCTTT GAAAATGGGT TTTATTAATT ACATTGGGCT 
TCAAAGGCCT TTTAACGAAT CTCAGAAAAT TAAAAAATGA GTTGGAGATG 
CNGGGGGATC GAACCCCGTG CCTCTCGCAT GCAAAGCGAG CGCTCTACCA 
TTTGAGCTAC ATCCCCAATA TGTTTACTTG TGTCTGAATA AAATAATAAT 
AGGATTGTTG TTCCTTCGTC TCTTTTCTCT TATAAGTGGC CTGTTGCAAT 
CTCTCTCTGG GTTTCTCCTG AGAAAATCGT TGGAGTTAGA AACCATGGAT 
GATAGTTGCG CCGTTTGCGC GGAGAATCTC GAATGGGTTG GTTACGGATC 
TTGTGGTCAC AGAGAGGTTT GCTCTACTTG CGTTGTTCGT CTTCGTTTCA 
TACTCAATGA TCGTCGATGC TGTATCTGCA AAACCGAATG CCCCGTCGTC 
TTTGTCACAA AGGTTAGGGC TTTTTCCTTA ATCTGCTCAA ATGTGTTGCT 
CTTAAATGGT AAAAGATAAA CTTTTTTAAG ATAGTGAGAA TCTGAGACTA 
AAACTTGTAA ATTTGCTTGA ATCTTGGGTT ACATTTGCTG TGTTCTATTG 
CAGGCTTTGG GTGATTATAC AAAGACGATT AGTGATTTCT CGACTACTTT 
CCCATCAGTA CCAAAGGAAG GGCGA

AT2G47090.1

Model type: Protein coding
Short Description: zinc ion binding;nucleic acid binding
Computational Description: zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1); Has 6997 Blast hits to 1745 proteins in 389 species: Archae - 0; Bacteria - 1326; Metazoa - 1009; Fungi - 441; Plants - 119; Viruses - 26; Other Eukaryotes - 4076 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47090.2

Model type: Protein coding
Short Description: zinc ion binding;nucleic acid binding
Computational Description: zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1).
Link: InterPro Scan - TAIR

AT2G47110.1

Model type: Protein coding
Short Description: ubiquitin 6
Curator Summary: polyubiquitin gene
Computational Description: ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47110.2

Model type: Protein coding
Short Description: ubiquitin 6
Curator Summary: polyubiquitin gene
Computational Description: ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1).
Link: InterPro Scan - TAIR