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12-5096-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23505140 [Map]; Strand: c
      • AT5G58080.1 - [+] show detail - response regulator 18
        Distance: -997; Region: promoter
    Flanking Genome Sequence: 12-5096-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGGT 
    GCATAGTGCC AATTGGACTC GAAGATTAAG AAATTAGATA ATCGTCTCCT
    AGTTTCCTAT CTAGAAGAAC GAGAGCAAGG AGAAAGGGAA ACTTCATATG
    AAGAATTGGA AGTTGTACAA ATCTGTAGTA CTATAGATGT CTAAAACAAC
    AAAAGGACAG TCTCTCCAGC ATTTATGAAA CAGAGCTTCA GGGAGAAAGA
    GAGCGCAATA GACTTTCCCA ACTACTATAG TACAAATTCA AATGCTCATT
    TGGGCCTGAT TTATTGAACA TGGCAATATG GCATTGTTTT AAGGTCAGTT
    TGGTCCCAGA AAACAGCTCT AATAATCACT TGGTCTAAGG AAGAGAAATC
    AGAATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23505065 [Map]; Strand: c
      • AT5G58080.1 - [+] show detail - response regulator 18
        Distance: -922; Region: promoter
    Flanking Genome Sequence: 12-5096-1 - 5-prime edge
    CCACTCCAAA AATTAGTCTT TGATCTGATT TCCAGTACCA CAGAGACTNA 
    TTTCCATGAT TANTNTATNT GNAAGAACAA CCAAGGTGAA AACTGCGTGA
    CAGATGANNG ATGCTGATGA GGCTNCAACA GTCTTAAGGN TNGCCATCNG
    CAAACCCTNG GAACNGNGGG CGGNTCCAAA AAATAGGCTT TGATGTGNNG
    GCCACTACCA CAGAGAAGGG TTNTGGNGNG GNTNCCNTNG GGGGGGGGGA
    NANNCANNGG GAGGANNGNN GNGNGANANN ATNNNNANNN NGGGGGGGNT
    NNNNNNGNNN GGAGGGGGGA GGNAGNANNN NNNGGGGGGG GNNGGGGGNN
    NGANNAANAA NNNNNNNNNG NGGNGGGGNN GGNNGNNGGN GGGGNGGNAN
    GNNGGGGGNN NGNNNNNNNN NGGGGNNNNG GGNNGNNNNN GGNNNNNGNG
    NNNGNNNNNG NNNGGGGGGG GGNNNNNNNN GGGGGGGGGG GGG

AT5G58080.1

Model type
Protein coding
Short Description
response regulator 18
Curator Summary
member of Response Regulator: B- Type
Computational Description
response regulator 18 (RR18); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 12 (TAIR:AT2G25180.1); Has 83273 Blast hits to 82938 proteins in 2948 species: Archae - 359; Bacteria - 74242; Metazoa - 38; Fungi - 293; Plants - 2583; Viruses - 2; Other Eukaryotes - 5756 (source: NCBI BLink).
Link
InterPro Scan - TAIR