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12-5108-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10641234 [Map]; Strand: w
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-5108-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AATGACATTG ATGTTTCTCG GGTAGGTTCG
    ATTACTCCTT CAATGGAAGC AACCTCTCCG ACTCCACCTT CTGATGAAAA
    TGTAGCTGCT ACTCCTAACA CGGAATGTGT TATTTCTCCG GTGGCTACTC
    CGTCTGTTCC TGTTATTACT AAGAGTATAG TTCCCAACGT ACCCGAACCT
    GTTGCTGCTC CGACTCCAAG CGTTGTCACC CCTCCGCCTC GTCAAGGCAA
    GCGTTCGGTT CAGTTACCGG CTCGCCTCAA TGATTACGTC TTATACAATG
    CAACAAGTGA AGTTTTAACC CATCACGCTC TCTTGTCCTC TAATCGTAAG
    TCTTCGTCAT CGGCCCAAGG TAACTCATTG TATTCGTTAA CAAATTTTAT
    CTCTGATGAT AAGTTCTCTC CAGGTCATCG TGCGTACTTA GCCGCGATTA
    CTAGTAATGT TGAGCCTAAG TCTTTCAAGG ATGCGGTGCG TGTGAAAGTA
    TGGAACGATG CTATGTTTAA AGAGGTCGAT GCTCTCGAAA TTAATAAGAC
    ATGGGATATC GTTGATTTGC CACCAAGAAA GTTAGCTATT GGAAGTCAAT
    GGGTGTATAA NACGAAATAT AATGCTGATG GTTCCATTGA ACGTTACAAA
    GCTCGTCTTG NTATCCAAGG AAACAAACAA NTTGAAGGTG AAGACTACAA
    TGAAACTTTT GCNCCAATTG TGAAATGACT ACGGGCCGTN CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10641241 [Map]; Strand: w
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-5108-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGAATGTCAT CGTCAACAGG CAGAATTGGA GTGATCGAGA AACTCCCCCT
    GTCTACTGGA GGCATACACC AATCAGAATC AGAGACTATC GGGACAGCTA
    GCGACGGAGC GGAAGTAGGC TTCTCAGCAA AAGGAAAAAC GTCTTCCCGA
    AAAATGACAT CACGAGATAT GAAAAACCTA TCTTGCTCAA TATCGAAAAC
    TTTCCATCCT TTTTGGCCAA ATGGGTATCC GACAAAGATG CACAAACGAC
    TACGTTCTCC AAATTTGTCT TTATCTCGTG CAACACGGTG TGTGTAGCAA
    GCAGATACAA ACACTCGTAA TTGATCATAA CATGGTTTGG CCCCATAAAG
    AACTTCATAA GGTGAACGGT TATTGTGAAG AGAAGTGGGA GTGCGATTAA
    TCAAATAAGC AGCTGTTAAG ACTGCTTCAC CCCAAAATTT AATTGGGAGA
    CTTGCTTGAA ACAACAAGGC CCGAGCAACA TTAAGAATAT GTCTATGCTT
    TCTTTCAACA CGACCTTTTT GTTGTGGAGT CCCGACACAC GAAGTTTGAT
    GAACAATTCC ATGTTGACGA AAATAAGATG AGAGACACAT GAATT

AT5G28635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR