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12-5125-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20693585 [Map]; Strand: c
      • AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5125-1 - 3-prime edge 
    GTGATCAGAA TGGCTGTCCT CGCCGTCATC ATCACTAACG TCTCCAAGAT 
    ACTCAATAGT TAGTTGGTTT ATCGATTCAT CTGAAGATTC TTCTGTAGCA 
    GGAGCTGTCT CTCCAATATT TAGGTATTAT AGATACATCA AATTTAGGAT 
    CTGAGGAGAA GAAGGTGAGA GGGTGAGAGG GGTGAAAAGA GCTTCTTATC 
    ACCGGCAGAA AGATGTGACA ACCTCTGTGG AATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20693469 [Map]; Strand: c
      • AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5125-1 - 5-prime edge 
    CTGATCACGA TCTTGGTGCT AGTGAAGATG ACGGCGAGGA CAGCCATTCT 
    GATCACGATC TTGGTGCTAG TGACGATGAC GGCGAGGACA GCCATTCTGA 
    TCACGATCTT GGTGCTAGAG ACGATGATGG GAATGGCAAT GGCGCTGGCG 
    ATGTTCATGC TGATGGTGAG GCCTCTTTAT CCGATGGAAA TCACCTAAAA 
    TGCAAATGTT GTGGGGTTCC TTTACAAATG ACATATTATC ATTGTTCTAT 
    CTGCAAGTTC AATCTTAACT TGGATTGCTC GATGAGACAA CCACCTCCCA 
    TTATCTCACA CTTGAAAAGT CATGAGCACA CCCTAACCCT CTTCCCTATA 
    CGACTCCCTT TGCCATGTGA TGCTTGTGGC TTGTCTCTAA ACGACACCGA 
    AGATCTGGTT TACTCTTGTC TACCTTGCAG CCGTATGGTC CACAGATCAT 
    GTATCTATCT TCCTCGTGTC ATTAAGATCA CCCGNCNNNN NCGTCGACTA 
    TCNCNGCCTT TCTNCCTTCA ACCTGGTGAT TTCTCTTGTG GAGTTTGTCG 
    CCAAACTGTT GACGTCAACT ACGGGCAATA CTCTTGTAAT AAGGAATGTC 
    ATTATGCTGT CCATTCCAAA TGTGCAACAA GGAATGACNT GTGGGATGGA 
    AAAGATCTTG ATNGGAGTGC CTGAAAAACC CGNTGAGTT

AT1G55420.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink).
Link
InterPro Scan - TAIR