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12-5162-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5140 [Map]; Strand: c
      • AT5G01010.4 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: -79; Region: promoter
      • AT5G01010.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to ...
        Distance: -97; Region: promoter
      • AT5G01010.2 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: -146; Region: promoter
      • AT5G01010.3 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: -97; Region: promoter
    Flanking Genome Sequence: 12-5162-1 - 5-prime edge 
    GATTCATCAT CATAATTTCA CAAAACATTA AACAAAGACG ACGATAGTAA 
    ATAAAGGCTC AGTGGGCTTG AATAAAGGAC CAGTGGGCTT GAATAAAGGC 
    CCAGTGGGTA TTGTATAAGC CTTTTGGGAA GAGCGAATAT GCGGCCTAGT 
    CGTCGTCCAA CATTTTTCGT CGATCATAAT CAATAAGTCT TCTTCTTCGC 
    CGGCAGAGAG AGAATTTGCT TGGCTTGGCG GTGGCATGGA GCTCTGGATT 
    TGTGTGTGAG TGAGTAGATC GCGCAAAGAA TCTGAAAATG GCGTCAACGG 
    AAGGCCTTAT GCCTATCACC CGGGCTTTTC TCGCTTCTTA CTACGACAAA 
    TATCCTTTCT CTCCTCTTTC CGACGACGTT TCTCGGCTTT CCTCTGACAT 
    GGCATCTCTG ATTAAGCTAT TGACCGTCCA ATCTCCCCCT TCACAAGGTT 
    TCCGATCCAC CTATTTATTT ATAGCTTCTG CTTTTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 144774 [Map]; Strand: c
      • AT5G01340.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: -54; Region: promoter
    Flanking Genome Sequence: 12-5162-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    GATGTCATTG GCACTATATT CTCATAATAG TGGGTTTTAT TTAAAATAAA 
    TATGTATATT CAATCAAAAA ATGAAAATAC TTTTACATCT TCAAACCACG 
    ATACCTAATC ACATATATAT AGTAGTACTA GTATCAAACA CCTTTCAAGT 
    TTCAACAACC AAGGTAAGTT TGGAGTAAAT GGATTTCATC ACCATAAAAA 
    TGGTAGATGT GATTTGGGCC TCTTATTAAA AGGGACCATC TTTGATTTGA 
    TGTCTTGTTC AACGGTCGTA AATGCCTAAC TAAATGACTA TGCTTGGTCA 
    TTGTTTTTAG TTTCGCAAGG CCAATAGCCA TTGATTATAC CCTTTTCATT 
    GCCTTTTTCG CTTTGTCCTC TTCTTTGGTT TANAATGTTG TTGTTACGCG 
    TTTCTTTTTT CTTTTTCTAG GCACAATTTT GACGACACTT GGGTTCCAGA 
    TTTTATTATT CAATTTTTGT TTTCCTAGAG CTGATATGAA TAAGCT

AT5G01010.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.2

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 85 Blast hits to 85 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.3

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 76 Blast hits to 76 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.4

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038).
Link
InterPro Scan - TAIR

AT5G01340.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR