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Mutant Lines
12-5224-1

12-5224-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 19900333 [Map]; Strand: w
  - AT3G53690.1 - [+] show detail - RING/U-box superfamily protein
    Distance: -268; Region: promoter
  - AT3G53700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-5224-1 - 5-prime edge
```
GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATACTA TCCATTTTCT ATCTCTCAAG CTGTAACCCT 
AACTCATCAT TCCTTCTCTC TCAATCTAAC TCCTCCTTCT TCTACCATCT 
CCTTCGCTTC TCCTCACTCA GCAGCTCTCT CCTCTACCGA TGTCAAGCT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 19900276 [Map]; Strand: w
- AT3G53690.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -211; Region: promoter
- AT3G53700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -4; Region: promoter

AATTTGAGAC ATGAAGAGAA AGCCATAGTT TTCAGTTTCC AGAGAAGATG 
ATGATAGTGA AGCAACAAAA GGGGTTTAAG GATTTCGATT TTTTGCTAAC 
CGACCGGTTC GTTCGTGAAC CGGACAATTA TTAAAAATTC GATTTAGGTT 
TTTTAGCAGT AAGCCAAAAA GTGAGACGCT TTGGAAAATG GAAAGTGATT 
CAATGCAAAA GAGCAAAAAG TAGTAAGTGA TTCATAAACC CTAATTCTGA 
TTGTGGACGA AACCTAATTA GAATCATTTT TGAAATGGCG ACACAGTCAG 
TTAACGCAGT GATCGTTGAT CTTCCCGGAG ATGTTAACGA CGACGGCGAT 
AATTCCGATT GTTTCATCTT CTCCACTCCT CCTCTCTCTG CACGTGGTTC 
CACAAAGCGT GATGCTATTT CCGTTGAGAA TTACGATCGT GATCGGAAAC 
TTCAACGTCT CTGGGTCTAC CCTCCTCACA AAACCGTAAT CAAGTCANAA 
TCTCCAATTT ACATAGATCT TGATCTTTAC GATGATGANG ACGATGATAT 
CAGAATCCTC TGTTTCGCAC CACCANTCCA CAGAGAAAAG GGACAGTCTT 
CTTCGTCNAA GACGGCGACT TTCGACTGTG AGATATGNGT TGATTCCAAA 
ATCCATAATT GGAGTCGNTT CGNTATCGGG NGGATNCTNT TCACTTNTNC 
TGCAACAACT GNGTTTNNAA ATTTNNNG

AT3G53690.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3158 Blast hits to 3141 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1307; Fungi - 709; Plants - 671; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G53700.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link: InterPro Scan - TAIR