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12-5260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11897416 [Map]; Strand: c
      • AT4G22590.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -936; Region: promoter
      • AT4G22592.1 - [+] show detail - conserved peptide upstream open reading frame 27
        Distance: -936; Region: promoter
    Flanking Genome Sequence: 12-5260-1 - 5-prime edge 
    CTTGCAAGTT ACAACTTAAA ACTTTGGTTG GTCACTAAAT TATTATGGGT 
    CCTGTGATTA TGATTCTTCA TCATCTTAAC TCCGTTAATA AACGTTAGCT 
    TTAAACCCAA TTAGCGTCAG GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11897480 [Map]; Strand: c
      • AT4G22590.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -1000; Region: promoter
      • AT4G22592.1 - [+] show detail - conserved peptide upstream open reading frame 27
        Distance: -1000; Region: promoter
    Flanking Genome Sequence: 12-5260-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TGCTTGCAAG TGGACCTCAA TGCTGAATAA ACGGTTGTGA TTAGCTCTCC 
    GTGATCACTT TTGTTTAGCA GTGCATGCTT GTTGCCTTTT TCGTGGTGGA 
    GTTAACAAAA AAGCATAATA TAATTAATCA ATTTTAACCA TATTTTCAAT 
    GTAGCTAAAT ATAATTCTTT TTCCCCAAAG GGAGAAAATC GCATATAAGT 
    AGATTTTGGT TTTGTCTGTG CACCGGCTTT GGAAGGTTCA CCACGTGTAT 
    CCTACGCTGA CGATTGACGA GTCGCAACAA TAAGCTGACG CAATGATGAC 
    ACAGCTTTAC TTTACAATAA AGGACGAATT

AT4G22590.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G12430.1); Has 2353 Blast hits to 2348 proteins in 847 species: Archae - 42; Bacteria - 1327; Metazoa - 222; Fungi - 153; Plants - 482; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22592.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 27
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF27 represents a conserved upstream opening reading frame relative to major ORF AT4G22590.1
Computational Description
conserved peptide upstream open reading frame 27 (CPuORF27); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR