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12-5299-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1745032 [Map]; Strand: w
      • AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5299-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GTCTAACTTT TTCACCGGAG CTGCTGACTC 
    ATCCTCGCTG AGATCCGATT CGACGACTTG TGGAGTCAAC AACTCATCCG 
    ACGGACACAA ACAGCTAGGC AATAACAATA ATAATAATAG TAATAAAGAT 
    ATCTTCCTCG ACAGATCCTA CGGTGGATTC AACGAGATCT CGCAACAACA 
    CAAGAGCAAC GACATCGGAG GAGGAAACAG CTCAGGATCT TACTCTCTCG 
    CTAGACAACG TAGCTCTCCC GCCGATTTCT TCACCTACCT CGCCTCAGAT 
    AAAAACAGTT AGTCCTTTTT TTACTCAAGA ATAGTAACTG TGATGAGATA 
    TATATATTTA GACAGACAAG TTTACTCATT TTCAGACCAT TTTTCCTTAG 
    AATTTGCCAA AAATCGTAAT GTAGAATATG AGCTATATAG TTTTCAGTCA 
    TTCAATCATT CATTGCTCAA CTAAAGATCC GTTTTTTGGT GAAATGAAAA 
    TCTAACACGA GGGTATTTTC GGTATTTCTC ACTGTGAAGT ATCTAGTTTC 
    TTACAAGTTA ATTAACGACT ATGTATATAA AATAAGTTGA CATTGTGAGC 
    TTTGATATTT AGGGTCGTTG CTAAATTANC TTGGGTGGTA CTTGTGCAAG 
    ACGTGATCCT CGTATTTTCG GAATGACNAA AATACCATTT GATCCCTAAC 
    CACGTGCTTG AAATACAGCA AAAATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1745028 [Map]; Strand: w
      • AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5299-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATGAAGTTAT CCGACGACGG TTGATAGCCG GTGAAGTCAC GAGCGTTTGA 
    TGAGCCTCCT CCGATGACTT CGTCAACCAC AGAGTTTAGA AACGATCCCG 
    GAGCTGAGCC GTAACGGATC AGTCCTCCGC CGCCGGGAAG CGATGATCTC 
    TGCGATGATG ATGACGTGGA GGATGATGAT TGGTACATGA CTTCTTCTAT 
    CGCCAAATGG AGAGAGAGAA ATCTGAAAAG TTTGGTTTCT AAAAGAAAAA 
    TAAAAGATGA GAGAGAGATG ATGCTTTTGT TTATGGGGTA ACAAAAAGTC 
    TTCACTTTTC AGCGATTGGC TATTCGTTGG ATGTCACATG TGTCTCACGT 
    GATCTTCCGA AAGATATGGT ATTAAATTTA AACCGAAATA AGCCAATCAA 
    AAACCTTTAT TAATACTTAT TTATTTTGTA ACGAGTCAGC TTAACCTTTG 
    GGCTTTGGGG CCGCGAATAT GTGGGCTGGG CTTGATAAAA AGATAAGCAA 
    CATTTGCGAT GTCTTTGATT AAGTTTAAAT TTCCCAAGAT GTTGAGGTTT 
    TCAGTGGAAT GCAATTATTT TTCTCTAGTG TATATAACTC ACATTGTTAA 
    TTAAAGATTT CAAGATCACA NAAATGTTAA AGGTAAAAAT TAAAATGATT 
    CNATAAAATT NGACTTANTT GCTTAATANT AAATTGAACA AACNTAAATG 
    CTTATTTNNN ATGCNTGGTT CATG

AT1G05805.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2); Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2; Bacteria - 54; Metazoa - 424; Fungi - 144; Plants - 1472; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Link
InterPro Scan - TAIR