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12-5408-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334771 [Map]; Strand: w
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-5408-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GAAGCTACAA ATGATATCTT CTTAAGTGGA GGAGACTTAT ACAAATCTGT 
    TTTGAAGATG TAAGTCTATT TATAGACAGA CAAGAGTTTA TCTATTTATT 
    CATTGGGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334839 [Map]; Strand: w
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-5408-1 - 5-prime edge 
    AGCTTCTTAC AATGTCGCGA CCAATCCCCA TTGAAGGTTA AATAATAAAC 
    ATAATTTTGT GTCTTATCTC TTTAGTCTTT ATACAAGTTC TTATAATAAT 
    TTTCTCTTCC TCACAGAAAT GGTGAGGCNT GTTCAAAATA CGTCACACAA 
    CATCTCACTT GTTCAAGATA GACAACTTCT CTTTACTCAA AAAGCATGGA 
    ATCGAAAAGG TCGAATCCTC TGTTTTCGAT CTCGCTGGTC ACAAATGGTG 
    TGAAGCT

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR