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12-5429-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23209330 [Map]; Strand: w
      • AT1G62680.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5429-1 - 3-prime edge 
    TTTCTGATGC TGTATCTTTG GTTGATAAGA TGGTGGAGAT TGGATATAAA 
    CCTGATATTG TTGCTTACAA CGCGATTATT GATAGTCTTT GCAAAACCAA 
    ACGTGTGAAT GATGCTTTCG ATTTTTTCAA GGAAATTGAA AGGAAAGGGA 
    TTAGACCGAA TGTTGTTACC TACACTGCGC TTGTTAACGG TCTTTGTAAT 
    TCGAGTAGAT GGAGCGATGC TGCTCGACTT TTGAGTGATA TGATCAAGAA 
    GAAAATCACT CCTAATGTGA TTACTTACAG TGCGTTGCTT GATGCGTTTG 
    TGAAAAACGG AAAGGTTTTG GAGGCTAAAG AGCTTTTCGA GGAGATGGTA 
    CGAATGTCTA TTGATCCTGA TATCGTGACT TACAGTTCGT TGATCAATGG 
    GCTTTGTTTG CATGATCGGA TAGATGAGGC TAATCAAATG TTTGATTTGA 
    TGGTTAGCAA GGGTTGTTTA GCAGATGTAG TGAGTTACAA CACTCTTATA 
    AATGGATTTT GTAAGGCGAA GAGAGTANAG GATGGGATGA AACTGTTTCG 
    TGAGATGTCT CANAGAGGAT TANTTANCAA TACGGTTACT TACAACACTC 
    TTATCCAAGG GTTTTTTCAA GCAGGCGATG TTGATAAAGC TCANGAATTT 
    TTTANTCNNA TGGATTTTTT TGGNTCTNTC CTGANATNNG NACCTAAN

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23209446 [Map]; Strand: w
      • AT1G62680.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5429-1 - 5-prime edge 
    ATCAGAAACT CTATTCCTAC GACAAAATCC GTTAACAAGA GATCCAATCG 
    TGACTCTATC TGGCTCATAA CCAAGTTTCA ACATCTTGCC AAGAATAGAT 
    AAAGCTAGAG AGACTTGAAA ACAGCAACAG AAACAATTAA TCACAATGTT 
    AAATGTATAA AGATCATTTC GAATCCCCAA AACTTCCATC TTCTTCCCCA 
    AAGAGATAAC AACATCATAC TTCTTCAATT TAACAATGGC ACTCAGCAAT 
    CTATTGAAAT CGACAATGGA AGGAAAGGGA CGAGACTTGA CCATGTCACT 
    GAATAGATCA ATCGCATCGT TTAGCTTTAT ATCACGAAGC CGAGTTTTGC 
    TTAATCTCTC TCGCAAATCA CCACCACTGA CGCTTGAAGA AGCTCGTACC 
    CAGCAACGAC AGGAACTGCA ATGGCTAAAC GAAGGAGAAG AAGCAGTTCT 
    GGGTTTACCA TTCTCGAGAA GATTGCGATG AAGAAATCTC TTCGCCGTCA 
    TCGCAATCGA TCTCTGCATT TCGATGTTCG ATTTTTGTCT CCGATTGAGA 
    ATCCTCCTAC AACGAAGTGT TTATTGAAAG AGACGGGAAT GAAAACCGGT 
    TTAGTTCCGG TTAAATTCAG TATAAATATT TTTGCTATAT CAGTCAAACC 
    GAATCGAATC GAATCGAATC CAAACGCAAG T

AT1G62680.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 64113 Blast hits to 15255 proteins in 308 species: Archae - 5; Bacteria - 67; Metazoa - 910; Fungi - 1189; Plants - 59601; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).
Link
InterPro Scan - TAIR