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12-5453-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178490 [Map]; Strand: w
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -329; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -532; Region: promoter
    Flanking Genome Sequence: 12-5453-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GCGTCCAAAT TTACGTTAAT ACAATTTTCA 
    AAGCATTGTT TTTCCTCTCT TTGGAGAAAG TACATGCAAA ATCAAAATTA 
    ATGGCTCCTA CTTTTCGAAT CACCGCAAGT TACTATCTCT TCGAGTTCTA 
    GTTATAATAG TACTTGACTA GATACTTCTT ATAAGACTTA AAAGCCAACT 
    TAAATGCTAT TGCAGTAAAG ATTTCATTCC TTCTTCACTT CACTTTACGA 
    ATCTAAAGGA TATATTTAGT TCTTCTGCAC TTCAACTAAA AGGCTAAACT 
    CCCAAAAAAA TATTTTTATC TCTCTCAAAA CTTGAAATAT GGTGAGGAAG 
    ACTACTCAAG CTACATCTCA CAAGGTATCG ACAATATTTT ATTTTTATTA 
    TTGCATGAAG ATTTGTTTTG TCAATGCATG AAGATCCCAA AACTTGAAAT 
    ATGGTGTTTT ATTTTTATCA TTACATGAAG ATTCGTTTTT TATCATTGCA 
    TCTCACAAGG TATCGACAAT GTTTTATTTT TATCTTAGTC TTTGTTTGGT 
    TTTATGTGTG TAGCGAAAAC CAACGACATC GTTAATTGAC TCATACGCTG 
    CACAATGTTG GAAGTGTCTT AAAGTGAGAT CTATAGAGTC ACAAGAAGAT 
    TACGAAGAGA TTCGTAGTAA AACACTGGAA AAGTTTTTTG AATGCAANAN 
    ATGTGAAGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178483 [Map]; Strand: w
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -322; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -539; Region: promoter
    Flanking Genome Sequence: 12-5453-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTG 
    AGATACATGT AGGTTAGGGC TAGCTTTACA TCATTAGGAC AGGCGTTTTA 
    GTTACCCCAA CCCTAGATAA TATTAAAAGT TCCAATTCTT AAAAAAACTG 
    TAATATGCAG CCCAATAGAA TCGTATAATG TCAGTGACCA CNTTAATTTG 
    GTGTCAACCA ATTAAAAAAC TGATCATTTA TAGAAATATT AAACTAGTGA 
    TAATGCGCAT TTTGAATGTA AGACAAGCAT ACATATAAAA GTTTTATGAG 
    TTATTTAAAT TATTCAATTT TGGTTTAAGA TTTTAAATGA TGTGGACATA 
    TATAAGAAGG CAAAACCATA TACTGTACTG TATTATATAA TCCATTCTTC 
    GTAACATTTG GTCTGTTCTT GGCTCGGAAG TTGTCTCTGA CCAGAGCTGT 
    GTTCTACATG ATTATGCAAT GTCTCGGAGC CATCTGTGGT GCCATCTGTG 
    GTGCCATCTT TAAGACTAGT GAATATCGGC GCATCTTTAA GCCTAGTGAA 
    TTTCGGCCCA TCTTCAAGAC TAGTATGGAG GCCTGTTAAG GGTCTTCTAA 
    TACAGCTCAA CAAGCCTTTT TGTGTAAGCC TAGTGAATTT GTAATACACT 
    TTGTCTCTGG TCAAACACTT TCATGCGTTT TTTTTTATAA ATATGTTTAA 
    TGAGCATAAA TGTGCGGCTC AAAGCGGNGC ACCTCCCAAC GGGCAAATAA 
    ACAAATT

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR