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12-5535-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26427486 [Map]; Strand: w
      • AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: -3; Region: promoter
    Flanking Genome Sequence: 12-5535-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTTGTG 
    TGCCTCCTGC CCTTTGCAAA CAAACAAACA CCAACGCTCC TTGTACAGTT 
    ACTTAAATAC CCCTCTCGCT ACCAATCCGT GTGATTTCAC CTGATTGGTT 
    AATTAACTAA CCCTCGTAGT TAATTACTGA GGTTAACAAA TCCCTGTTTT 
    AACNTTTTGA CGTGCCTATC AAATTTATAA GTTGTGTTTA TTAAGCCTCC 
    TGTAGTAATT TGATTCTATT CTACATGTAC CAAGTAATTC ATTAGGGGAT 
    AAGATTAAAA AGATTTTCTC TTCTAATTGA GTTTTTTTTT TTTTTTTTTT 
    TTTTTTTTTT TTTTTTTNNA GNGGGGGNNC CCCCCCNNTT TTNNTNNTNN 
    NGNNNAAAAA AAANNGGNCC CCCCCCCCNC CCCCTTAAAA AAAAA

AT5G66100.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR