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12-5550-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18512151 [Map]; Strand: w
      • AT1G49980.1 - [+] show detail - DNA/RNA polymerases superfamily protein
        Distance: 0; Region: exon14 (3UTR)
    Flanking Genome Sequence: 12-5550-1 - 5-prime edge 
    CCTCTTTCAG TAACGAAACC CAGAGGAAAT GAAGATGGCT CTGAGCCCAC 
    CGAAACTCAT TCTCTCACCG TCCAATTCCC TCGGCGATTC CAATTCCCTA 
    CCGTCGATGT CAGACATCCT GACGTCATCA AAAGCTCGAA AGCTAGACTT 
    AAAGATCCAG ACTTTAGGAC CGTTTTTCAG AGTGACAGGG AAGAACGCAG 
    ACACGGGCGG TGAGGTGGGA AGAGCAGAGG GAGTGGTGCG TCCATGGTTC 
    GGACGCGGTT TGGTTCTGCA TTTGGATACG ATAAGACTGA CGAAAGAGAC 
    AGTGGCTATG GATAAGTCTG TTCTTGGAGT TGGTTTATAC GTCGGAGCTG 
    TAGCGATTCG CCATGGCTAC GACTGTGGTT GCCGTACTGC TCAGCTTCTT 
    GCTATCTACG ACTCCGATCT CTACCATTCC AAGGTTTCTC TCTCACTCCA 
    TAACTCTTTC TATCGAAATT GAAATTGAGA ATTTTTGTTT GGTTATTATT 
    ACCGAACCGG ACCGAATCTA ANAGGTGATT TGATTACAGG TACCATGAAT 
    TTTGGTTTAT TCNGNTTANT TTTGTGACAT TTAAATTGGN TACNGNNNGG 
    CTTNGGTTTT NNTTTANCGG GGGNGNNNNA NTNNTNNNNN CNNNNNNNNN 
    GNNAANAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18411131 [Map]; Strand: w
      • AT1G49750.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 12-5550-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    ATATATATAG CCAAAGCCAA GTTGTTTATA ATTTGAGGTG TCTAATGCAA 
    TATAAGTGAA TAAATGTATT GTAGTTGTGT ACTTTCGGAT CATCACTATA 
    TGTATTTTCA TTGATGTATA ATCCATCCTT CTGTTTTTTC TTTGTACATC 
    TTGCTTTGTG TGAATCACTG TAAAATTGTT CATCCAATGG TGGATATCAT 
    CGATCAGATC ATCGATCAGA ATGTATCCAC TCTTGCACGC ACCATTGACT 
    AATCCAAAGG TTTGGTATGG CATAAAATAA ACATCTTCTT TTTAAAAAAA 
    CTTTTAAAAG CAATGGACGA CAATTTCACC CAATACTCTA AATTTAGAAT 
    TTACAAACTT GGTTAATATA TACACAGTAG TCCAGCCAAA AAAAAAANGG 
    GGGGGAGNGT AAGGGGNCCT AACCAAAANT ANACTTNACT TTCCCANTNG 
    NCNNAANCCN TNANCNTTNA ANANNAANCN GGGTTTTNAN AANANGTTTG 
    GNACCTNNTN AAAGGGANCC NCNCANGTTN NGGGGTCCCT TTNGGNACCT 
    TGGGTTGNNA ANGTNGTTNT NTCTAATTTT GGGCACCTAN NGTAAAAAAA 
    AATNTGGACC CCTNNGTTTT TTTGTAAATA AAGGGCCCAN CACTGGACNC 
    CNTTNNNNTT TNNATTGGNN NTTTGGNCAN AAAAAACCCT TNGNTNTTNA 
    AACCACCCCG GGCCCNCNNC C

AT1G49750.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19320.1); Has 196117 Blast hits to 67164 proteins in 2660 species: Archae - 391; Bacteria - 35192; Metazoa - 52079; Fungi - 12408; Plants - 67644; Viruses - 4658; Other Eukaryotes - 23745 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49980.1

Model type
Protein coding
Short Description
DNA/RNA polymerases superfamily protein
Computational Description
DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).
Link
InterPro Scan - TAIR