Home
Mutant Lines
12-5569-1

12-5569-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 18512121 [Map]; Strand: w
- AT1G49980.1 - [+] show detail - DNA/RNA polymerases superfamily protein
  Distance: 0; Region: exon14 (3UTR)

CCNGTGACGG ATACTAAGAA CCAACTGGAG CATGATCAAT GANGATTACG 
NNNATGGNGA CTGATGAATC TCAGAGATGA ATCTACTCTG AAGCAGGCTC 
CNNTCTNCNT CACCTGTGAA ANGNTCGTTA CAATCCTGNN CTNNTCNNNA 
NGGCGGTGAA AGCTNAGAAC ATNAAAGATN NANNCGGTTN GTGACCGGTT 
TGTTCAAGAG ATGACAGGGG AAGAACGCNA GACACNGGGC GGTGAGGTGG 
GAAGAGCAGA GGGAGTGGTG CGTCCATGGT TCGGACGCGG TTTGGTTCTG 
CATTTGGATA CGATAAGACT GACGAAAGAG ACAGTGGCTA TGGATAAGTC 
TGTTCTTGGA GTTGGTTTAT ACGTCGGAGC TGTAGCGATT CGCCATGGCT 
ACGACTGTGG TTGCCGTACT GCTCAGCTTC TTGCTATCTA CGACTCCGAT 
CTCTACCATT CCAAGGTTTC TCTCTCACTC CATAACTCTT TCTATCGAAA 
TTGAAATTGA GAATTTTTGT TTGGTTATTA TTACCGAACC GGACCGAATC 
TAAGAGGTGA TTTGATTACA GGTACCATGA ATTTTGGTTT ATTCNGTTTA 
NTTTTGTGAC ATTNAAATTG GTTNCNGNTN GGCTTTGGTT NTGCTTTANC 
GGGGGTGNNN NANTNNTNNN NCCNNNNNNN GNNNAC

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 22056781 [Map]; Strand: c
  - AT1G59910.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-5569-1 - 3-prime edge
```
GTCACCGGAT TTAGTCTCCT CTTCTTCTAG GTTTAGGGTT TTTTCTAATT 
TTCCCGCTAT TTTCCAACTC TAGAAGCT
```

AT1G49980.1

Model type: Protein coding
Short Description: DNA/RNA polymerases superfamily protein
Computational Description: DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G59910.1

Model type: Protein coding
Short Description: Actin-binding FH2 (formin homology 2) family protein
Computational Description: Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin 8 (TAIR:AT1G70140.1); Has 156785 Blast hits to 84417 proteins in 2586 species: Archae - 222; Bacteria - 29191; Metazoa - 66130; Fungi - 20882; Plants - 16945; Viruses - 3579; Other Eukaryotes - 19836 (source: NCBI BLink).
Link: InterPro Scan - TAIR