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13-0024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18064178 [Map]; Strand: c
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-0024-1 - 3-prime edge 
    CTCAAAAGTA TCTCATTAGC TTAGATGATC CCAAAGACTG TAAATTTTCT 
    GATAATGCAG ACATCAGAGG ACGATGGTAA GATCCAATTA CAAGTGACGA 
    GTGCCTCTCT TCAGCCATTC ACGCAGGAGC AATGGAGGAA CAACCAAGAT 
    TACNTTCATA AATACCGTAA TACACACACT AATTTCTAAC GTTAAAATCG 
    CAAACTACAT TCTTTATGTG GTTCCTCCTT AACACTTATT TTCAGGCGAG 
    AAAACGAGCA GTGACAATTC ACGTGTCAAA AGAAAACGGA GAGAGCGTTG 
    AAGGAGCAGA GGTGACAGTA GAGCAGATCT CTAAAGACTT CTCCATTGGT 
    TCTGCCATCT CCAAAACTAT CCTTGGAAAC ATTCCTTACC AAGTAAAACA 
    CACTCGCTAA AGTCTACACT AAAACAACAA TGTCTTTGCT TCTTTAAACG 
    GATTCTGTTT TGATAGGAAT GGTTCGTCAA GAGATTCGAC GCCACGGTAT 
    TCGAGAACGA GCTGAAATGG TACGCGACGG AGCCCGATCA AGGCAAACTC 
    AACTACACAT TGGCTGATAA GATGATGAAT TTCGTCAGAG CCAACAGAAT 
    CATCGCTCGC GGTCACAACA TATTCTGGGA GGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18064062 [Map]; Strand: c
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-0024-1 - 5-prime edge 
    CTTTTGAGCA TATATAGAAT CTACCTCAAA GAAGAGGATG GATTGTTTAC 
    AAGGAGAATC AAGAAGGAAT CCTCCTTTGA GGAAAGACCA GCAACCATGT 
    TTGGCAGTTA CAGAACCGAC GCAGTTTAAT GTGGCGTTGT CTGCTCTCAG 
    CCTTGCTCTT ACATGAGCTG ATGCAGCACC AGCCTCTATC TTCACCCATA 
    CTGTTGTCCA TCAGTCAGAT CATCACATTC ATTTCATCTG TTAACGAATA 
    TATAACATTC TAGAGATGAA AGCATGAAAT GCTTAACTGG AGAAGCAATA 
    GATGGTGTTC TGTGTGAGAT TGTGCAATAT GTAAGTTGGT GTGTAACGAG 
    CACCAATGCC TGTGAGAGAG TCTTTGCCTG GGACGGAAGG CTTTTGGTCC 
    TTCANCATTC CTCCATTGTA TAANGGCTTC TCTGNTTCAG CTNTACNACT 
    GTGGGATTTG ACATACNANN NNAANGCNNA TATACTTNCT TATNTTTGCG 
    CAANNANGNA ANCTTNNGNN AGNNGANATN ANNAGCNNCA AAGNNANNNG 
    NNCNNGGGNN GNNNNNCCNN ACCCNNNNCC TNNNGNGNNN GNNGNGNNNA 
    ANANGNNGGN NNNGANNNNN NNNTNGNNNC GGGNGAGGNG GNGGNGNTCN 
    CGCNGNANAG NAGNGGTTNN NANGNNNNGA CNNNCGANNN NGNNNNAAAN 
    NNNAANNGNN GACNGNTG

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR