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13-0100-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20725489 [Map]; Strand: c
      • AT3G55850.1 - [+] show detail - Amidohydrolase family
        Distance: 0; Region: exon1 (CDS)
      • AT3G55850.2 - [+] show detail - Amidohydrolase family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0100-1 - 5-prime edge 
    GGGACGAACA TCCACTTCGT CATACTGTAG TTGTTGTTGT TTCTGTTTTA 
    AGAATTTCTC CGGCGACTGA CTATGAACCT CTTCGTCATC GTTTCAGCTG 
    CCGTGTTCCT CCTTATCTCC GTCGCGTATC TTCCTTTGCT CAACGACTTA 
    TGTAAGTTCG CCTTCCAGGG TTGTCACACT TTTTTCTCAA ATCAGATAGT 
    TTGACTGAAA GTCGTCGATA CGANTGATGT TCGCAGATTG GNCAACTCTG 
    AAGTNTCTTA CACCACCNGC TGGTATCNAN GNGGATNTGN TANGTGACCN 
    ANGGGANNAA TNTTTANNAA AANANAAAAA ANANANNCNT NNNCCCAATN 
    NNNGNGNNAN ANNNNNTNGG CGCGGNANAN TTTNAAGNNG GAGAGANNAA 
    AGAGGAGAGA GNNGGNNAAN AGCNCGNNNG NNNGNNCCCC CNNCCCNNNN 
    AGGGGANTAN AATATANTNN CANNNCCCCG NCGCCCNCNA GGNGGGGAGN 
    GGGATTTNAN AAACAAACNC GCCGCGCCCC NNAAGNAGGG GGGCNNANTN 
    AAANNNNCCG CGCCGCNCNA AGAAGNGNNN GCGCTTNNNN NANA

AT3G55850.1

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.
Computational Description
LAF3 ISOFORM 2 (LAF3 ISF2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55850.2

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.
Computational Description
LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR