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13-0140-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23295643 [Map]; Strand: c
      • AT3G63030.1 - [+] show detail - methyl-CPG-binding domain 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0140-1 - 3-prime edge 
    ATCTCAGATC CCGTATTAGT AGTTACTATT GATGGAGGAA GTTATACAAG 
    GCATAGAATT

AT3G63030.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 4
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 4 (MBD4); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 1 (TAIR:AT4G22745.1); Has 159 Blast hits to 159 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR