1. Home
  2. Mutant Lines
  3. 13-0159-1

13-0159-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18065240 [Map]; Strand: c
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 13-0159-1 - 3-prime edge 
    CTCACCGAGA TTGATATCAG CAGCAGCCTC GACCACCGCT CTCAGGTCAC 
    AAGTCTCTGT TTTCCGGTTT AGTTCAGTTT GCAATTTGAA TCTGGTTTTG 
    GTTACAATTT TTAGCCGGTT TATTAACGGT TTTTCGAATT GATTTTGGCT 
    GAAATACNGG TATGTCTGTT AGGATGATAA AATCTGGTTG GAGTACACAT 
    TGATTATACT TGGGTGCAAG TAACCGGAAA TTTGTTACGT TTTCAGGCGA 
    TTTATTTGGA GCAAGTGTTA CGTGAAGGAT TCTCGCACCC ATCGGTAAAC 
    GGTATAATGC TATGGACCGC ACTTCACCCA AACGGCTGTT ACCAAATGTG 
    CCTCACTGAC GATAAATTCC GGAACCTTCC AGCCGGAGAC GTGGTGGATC 
    AGAAGCTACC AGCCCNGGGC CGTNGACCAC GCGGCCCCTA TAANNTNNNT 
    NNAACNTTTC NNNANNANNT TNNNNGGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18065124 [Map]; Strand: c
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 13-0159-1 - 5-prime edge 
    GGNGAGACNC AGANCGGGAG CTGGAGCGTA GCGAGTTTAT CGNAGGATGG 
    CTCTCATCAG CCGCTACATT TGGCGGTCGT GAAGTGACCC TCGAGACCTA 
    TTCCGTCCAT CCTTACGCCG TCGGTACCGT TGGAGTTCCC TCACCCTCGC 
    GATGTATTCA GTCAACCGTT GACTTCTCGT CGCTGCAAGT CTCCACCACG 
    TTGAAATCAT TGAAGAACAG AGTCGCCAAT GAGTCAATCT CACGAGCTGC 
    GGCGAAGAAT CCGTACGACG CGTTCTTCCC CAGTCGAGTC TNGTAGAAGT 
    CAAAGTGAAG CATCTCNTTG CTNAGNTAAC CAANGNACGA AGNNTTCCCT 
    NNNTACNNAG NACANNANAC TNTNGATGNN CCNGNNNAAC NCNNGAACGN 
    NNNNAATGAN NANCGNGGNN AAAATNNNAA AACACNNATA GNNGNNNNTT 
    GNNNAAANGA AANNNAAANN CNGAGGGANG NGNNGNNGNN NGCGCNCTTA 
    NANNANAATN AGAGAACTGN ANGAGGCNAT NGATAAAAAN ATNGGNNCAN 
    GGNANGNGGG GNAGGNGAAG GGGNGGNGAN ANNGAAGANN NGTAANAAGA 
    AGAGNNGGNG NGNNAGNNGA NTNGNANAGT NANNNANCNG NGNGNCNTGN 
    NNNGGNCGNN NGTNTAAGNG ANNNANNNGN GNNACGGAAA NNNANANCGA 
    CACNANAAGC CAGTANAAGN NCNAAAAGAC NNNANANCAA ACGACANAAN 
    NNNANGANAA NAANNANNA

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR