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13-0211-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16761133 [Map]; Strand: c
      • AT5G41870.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -557; Region: promoter
      • AT5G41880.1 - [+] show detail - DNA primases;DNA primases
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-0211-1 - 5-prime edge 
    CCCAAATGTG ATAAAGANNN AAANTNGCCG TAACAAATNC GGAGGTAATG 
    AACATTGAAA TCTGCTTTGN ATTTTGGGTT GNGGGTCATC AATCATCATA 
    TCCTCTNCAC CTGGTTNCAG TCTCCTCTCT CGTCATCGAT TTTAAGGTTA 
    TTCACTATCT GGGCAGCAAA AAGATCGATT TTTATTTTTA AGTAGAGATT 
    CCAAAGTCGG ATTGATTCAT ATACTGAAAC CAAAAAGAGT TAGAGAACAG 
    AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16761249 [Map]; Strand: c
      • AT5G41870.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -673; Region: promoter
      • AT5G41880.1 - [+] show detail - DNA primases;DNA primases
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-0211-1 - 3-prime edge 
    CATTTGGGTA TATGTCTCTT CATAAATCAA ATCTGACTTT TTTCGCTCAT 
    AACAACATAT ATGCAGGAAA TCTATTTCCT TACACTGATA TTCACAAATG 
    GCTTTCTTAT GGGCACGGTA CTTGTTTGTT TACCTTGTCT TTCTTTCTTT 
    CTGTCACACT CTTTAAAGGT TAGAAATGGT TGTGATGAAT TGTATATTTG 
    TCTGTGTTTG TGAATCTGTA GATGGGAAAC ATCCTGGTTG TGATGAATAT 
    TACTTTGGTA GAAGAGAATT

AT5G41870.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41880.1

Model type
Protein coding
Short Description
DNA primases;DNA primases
Computational Description
POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link
InterPro Scan - TAIR