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13-0215-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3753036 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: -256; Region: promoter
      • AT1G11200.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: -329; Region: promoter
    Flanking Genome Sequence: 13-0215-1 - 3-prime edge 
    TTCCTTATAC TCTTATAGTA TGTAACAGCA TCATCCATGT GTCATGTGTG 
    GCATATCTTA CAATAATTTA ATTAACGCCT AATCTTGTCA AACATTTGCA 
    TCTTCTTAAC TTGTTATTTT CTTTGTTCTT GCTTGTTTCA CAAAATAAAT 
    CAAACCAAAC CGCAATTTAA GTCCTAACCA ATTTTGTTTT AATGAATAAC 
    CAAATTTCAN TNNGGNNTAA ACTANTANAC NGAAANCCAN ACCGGNCGGC 
    TNNTNACGAC GGAGGACNTG GGTATATNCN TTGGTCGCAA AGAGGACTNG 
    GNTGATNTCT GAACCNGNNG ATGNNNAACA GATTGCTGGT CAAGAAAANN 
    ATGCNGTTAA TNAAACAANT CTATACCATN GACGANNCNT NCANTAACAN 
    ACAACTCNGA GAAGNTCTCC TACCTGAATC GTCCGGCTCN GATAANACTN 
    CCTGCTNCGT TTNAATCAAG GTTTGCCTTC TGATTCTCTC TACTTCTTCT 
    TCTTGTTCAT CTCTTAAGTT CAGTATCACA AAAAGTTNTC GATTTTGATG 
    ATCCTGAAGA GCTTGAAAGT AATGGGTTTT CGGCGTATAG TTACTCCTTT 
    TAGCCCCATT TTGCTGGGTC TTAGTTAAAT TGGGAATCTT TTAGCTCGTT 
    CGCAATGATT TGATTCTGGG GGTTCTANAG TNTAAAANCT GGGACTTAAA 
    CAAANAAAGN NTGTCAAAGN AGTGANGGTN CTATN

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11200.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF300)
Computational Description
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR