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13-0223-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18260840 [Map]; Strand: c
      • AT3G49250.1 - [+] show detail - defective in meristem silencing 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0223-1 - 5-prime edge 
    CTCACAGAGA CCGGAGAAGA AGCAGAGAGA AAGAGAGAGA GATTCACCGG 
    TGATAACATT GAAGCAGAGA GATTCTCCGG TGATAACATT GAAGCTGAGG 
    AGCAATGTAT CCGACTGGTC AACAGGTTGG TTGAAAAAAA CTCGGTTCAA 
    TTGCAAAATG GAACTAGATT AGTTGGAAAA AAACGAACGA ACTTTAGTCT 
    ATGATCTCTC TTAAACGATG AAGTCTCTCT GAAATTTTCT GTGAATCTGG 
    AGAAAAGACT CGTGCTTTAT TGTTTATTGA TGTATCTACT CTCGACATTT 
    TGTTTCTTTT TTTATTGCAT GCGACCACAT TGGATTAAAT TTGAGGGTTT 
    GTGTTTCAGT TTTTTACGAA TTTTAAGAGT TAGGGTTTAT AAAGGAATAG 
    TTTTTGAGTC ATTTTTGTAT CCAATTTTGT AGATTTCGTT TCAGACCACT 
    CCGTTGAATG TTCAAGATCC AACAAGGATG ATGAATTTGG ATCAATCTTC 
    ACCAGTTGCA AGAAATGAAA CTCANAATGG AGGAGGCATT GCTCACGCTG 
    AGTTTGCTAT GTTCAATTCC AAGAGGCTTG AATCTGATCT TGAAGCTNTG 
    GGTAACAAAA TCAAACAGCA TGAGGATAAT CTCAAGGTTT TTCAAGTCTC 
    ANAAAAACCA AAATGGATGA AGCTNTCGTC GACTTGCAAG GGTTTTGAGA 
    TATCATTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18260956 [Map]; Strand: c
      • AT3G49250.1 - [+] show detail - defective in meristem silencing 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0223-1 - 3-prime edge 
    TCTGTGAGTG TGAGGGTTTA ATTTTTGTCT TTAGTGTTCT TCTGGAGAAA 
    AACAGCCAAT TGTTGTGAAG TAATTAAACT AAATTAAAAT ACACCAATAA 
    TAAAAGGAAC GTATTTTGCC AAAAATGTAA GAAAAGTTTC CTTTTATCAT 
    TCAATTATAT TTTCTGGCCT TATTTAAGGC CCAATAAGCT

AT3G49250.1

Model type
Protein coding
Short Description
defective in meristem silencing 3
Curator Summary
Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.
Computational Description
DEFECTIVE IN MERISTEM SILENCING 3 (DMS3); BEST Arabidopsis thaliana protein match is: gamma-irradiation and mitomycin c induced 1 (TAIR:AT5G24280.1); Has 82 Blast hits to 81 proteins in 17 species: Archae - 6; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR