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13-0227-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3867564 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -595; Region: promoter
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -595; Region: promoter
      • AT1G11482.1 - [+] show detail
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 13-0227-1 - 5-prime edge
    NGNNAGACAA AGGNCNCCAC GNANNGCNTG NCGATATNCA TGAATNNATA 
    CTNNTCGGAN GCCTGNACAT ACACGTGGTT ANGGACTACG GAAGGAACAG
    GATTTGTAGC CTACTACCTT GCAGAGACAC AGAAAGATTC AGATTTTGAG
    AGGAAAATGC AGAGATCTCC AATGTCTCGA GTGTAAACAG CATTTCCTTC
    TTTTTTTTNN NNNTTTTTTT TTTTTTTTTT TTTTTTTNTN AAANNANNNN
    NNNNGGNNGG NGGNGNNNNG GGGGGNGGGG GGNNANNGGG NCGGNANNNA
    NNAAANNANN GNNAGGNGNN GGNAANNNNC NNNNNNNNGG G

AT1G11480.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11480.2

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11482.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR