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13-0257-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26564934 [Map]; Strand: w
      • AT1G70490.1 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G70490.2 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G70490.3 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-0257-1 - 3-prime edge 
    TTAGTACTGG TTTTTAAATT GTGATGATGG TATAAAATCT AGGATCGATT 
    AGTGATATGC TAAATTCTAT CAACAGGTTT CAATGTGGAA ACTGTGGAAT 
    ACAAGAACAT CAGTTTCACC GTGTGGGATG TCGGGGGTCA GGACAAGGTA 
    TGGAGTCTCT GTACTGCTTA TTGTTTGATG AAGGAACTTT TCACCCAAAT 
    AAACTGACTT TTTGGCTTCT TTTTCAGATC CGTCCCTTGT GGAGACACTA 
    CTTCCAGAAC ACTCAAGGTC TAATCTTTGT TGTTGATAGC AATGACAGAG 
    ACAGAGTTGT TGAGGCTCGA GATGAACTCC ACAGGATGCT GAATGAGGTA 
    AATATCCAGT GCTATAGAGA AAGAGTTCTT CTTCATAGTT TTGTTAGTTT 
    GAAAATCCTT TACTTACCAA CTCTTTTATT GCAGGACGAG CTGCGTGATG 
    CTGTGTTGCT TGTGTTTGCC AACAAGCAAG ATCTTCCAAA TGCTATGAAC 
    GCTGCTGAAA TCACAGATAA GCT

AT1G70490.1

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70490.2

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70490.3

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR