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Mutant Lines
13-0412-1

13-0412-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 11985775 [Map]; Strand: w
  - AT1G33080.1 - [+] show detail - MATE efflux family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G33080.2 - [+] show detail - MATE efflux family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 13-0412-1 - 5-prime edge
```
CTCCTCGCTC CATGCCTTCT CTACTCTCTC TTCATTCTCT CCTAAGCTAT 
GGCGAGAAGA GAAGGAGAAG TGACGGAGAC CCTTCTGAAA AAGTCGACGG 
AGAATCGCGG AGAAGATCGG GATGGGTTAG GGATGAAGGA GAAGGTTTGG 
AGGGAATCTA AAAAGCTATG GGTTGTGGCT GGGCCGGCGA TCTTTACGAG 
GTTCTCCACG TCCGGACTAT CTTTGATAAG TCAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 11985659 [Map]; Strand: w
- AT1G33080.1 - [+] show detail - MATE efflux family protein
  Distance: -48; Region: promoter
- AT1G33080.2 - [+] show detail - MATE efflux family protein
  Distance: -48; Region: promoter

GCGAGGAGAG ATTTTTGTTT GGTGGGTTGT TTATTTACGT ACGGAGGAAA 
TGAAAAGCCG GCCTACACCT CTTTTTAAGA TTCTTTAATT TGCCAAATTG 
GTATTTTATA TGCAAAATGA ATACCTTTTC ATAAATAAAT TTTAAATAAA 
ATTTAAAATT TGTCAAAATT ACATTTACAT TTATACATTG CATACCGAAA 
AAGACATAGC TAGTTTTGAA CAAATCATCC AAAAAATGGG ATGAGATAGT 
CGAAATATAT ATCACAGCGA GGTATGGCCT CTACAAATAT TTTACCAAAA 
GTTGGTGTTT GAATAGACAC ATCTTTTCTA ACCAAACCAA ATCCAATTAA 
TTGTTGTAAG AGTTTAAGGT TTTTTGAAAC GAACAAAACA AAAATGGAAA 
CTATTGAAAC ACATCACACA TCGGTGGTGG GGGGTGGGTG GTTGTNGNNN 
NANNGCNTNN NACC

AT1G33080.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 10684 Blast hits to 10626 proteins in 1975 species: Archae - 206; Bacteria - 7736; Metazoa - 140; Fungi - 326; Plants - 1352; Viruses - 0; Other Eukaryotes - 924 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G33080.2

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR