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13-0440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12266312 [Map]; Strand: c
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-0440-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTGAGGACTG CTACATAGTT TCCGGCGACG ATTGTATCGC CGTGAAAAGT 
    GGATGGGATC AGTACGGAAT CAACTACGGC ATGCCTACGA AACAGCTCTT 
    GATCCGACGG CTCACATGCA TTTCTCCTGA TAGTGCCGTG ATCGCTCTCG 
    GCAGTGAAAT GTCCGGTGGA ATTGAAGATG TTCGAGCTGA AGATATTGTC 
    GCCATTAACT CTGAATCTGG AATCAGGTAT GTAACCACCA AATTCACACA 
    AATCAACCGG TTTAAATTCG ATTTGATTAA CCGGATACCG ATAATTCTGC 
    AGGATTAAAA CAGCTATTGG TCGAGGAGGA TACGTGAAGG ATGTATACGT 
    AAGAATGAAT GACAATGATG ACAATGAAAT ATGTGTTTTG GATGACCGGA 
    AGTTACGGTT CTCACCCTGA TGAGCATTAT GATCCGAAGG CGTTACCGGT 
    GATTCAGAAC ATTAATTATC AAGACATGGT CGCCGAGAAC GTGACCATGC 
    CTGCTCAGTT AGCTGGAATA TCGGGAGATC AGTTTACTGG AATCTGTATC 
    TCTAACGTGA CGATCACTCT ATCNAANAAA CCTAANAAAG TGCTTTGGAA 
    TTGTACTGAT GTTTNNGGTT ATACTANNGG NGTGACTCCN NANCCNNNTN 
    NNNNGNTNNC NGANAANCAN NCNGGGACGG NNGNNCCNNN NNATTTCCNN 
    NNNANNCNNT TCTTTGNTNA NNNNAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12266307 [Map]; Strand: c
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-0440-1 - 5-prime edge 
    GNGATAAACN AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAT CCTCGTGTTG GTACAAGAAT CTGTAATAAA 
    CCGGAAATAA TTTCAGCTAA ATCTTAAAAA ACCGGTTATT GGAATTTTAA 
    GATTTTATCG GTATGATTTC GTTATCGTAC CTGGGTTGAT ACCGTCAGTG 
    TTTGGTACCG TGACCGGTGC TAAGATCGTC AAACCTTGGA TGTATATATT 
    GCTGCATTTT CGTAANAAAT AAACAAAANC NGNTTAATAG GGGTAAAANT 
    TGATAACCCA ATGGNTNAAC CCGGGNGNGA NAAANTTACC NGGTGTNGAN 
    CCGGGGGNAT NTTNCCCNNA AAGNGGNAAN TAAAACCCNG GNNGGGAAAN 
    NNCCCCCCCC CNNTNANNGN NNNNNNGGGG NNNGNNNNTN NNTCNAANNG 
    NGGGGGCCGC CCCCCCCCCC CCCCCGGNGN NGNGGTNNNT TANNNANNNG 
    CNGGNGCGNN CCNCCCCCCC CCCCNC

AT4G23500.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR