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13-0448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17179939 [Map]; Strand: w
      • AT1G45474.1 - [+] show detail - photosystem I light harvesting complex gene 5
        Distance: 0; Region: exon3 (CDS)
      • AT1G45474.2 - [+] show detail - photosystem I light harvesting complex gene 5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-0448-1 - 5-prime edge 
    ATGAAGCTGG AGCTGTGAAA TTTGATTTTG CTAGTACAAA AACTCTCATA 
    GTTGTACAGT TTCTACTTAT GGGGTAATGA ATCAAACTCA TTATCTATCT 
    TTATTGTTAA CCAACAAAAG CT

AT1G45474.1

Model type
Protein coding
Short Description
photosystem I light harvesting complex gene 5
Curator Summary
Encodes a component of the light harvesting complex of photosystem I.
Computational Description
photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G45474.2

Model type
Protein coding
Short Description
photosystem I light harvesting complex gene 5
Curator Summary
Encodes a component of the light harvesting complex of photosystem I.
Computational Description
photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Link
InterPro Scan - TAIR