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Mutant Lines
13-0459-1

13-0459-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 23402034 [Map]; Strand: c
  - AT3G63360.1 - [+] show detail - defensin-related
    Distance: -443; Region: promoter
  - AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -42; Region: promoter
Flanking Genome Sequence: 13-0459-1 - 5-prime edge
```
CNGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATATT GGTGTTCGTG TTTCCGAATT ATCTCTCTCG 
TTTTTTTCTT TTTCGGGTCA AGCT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 23402093 [Map]; Strand: c
- AT3G63360.1 - [+] show detail - defensin-related
  Distance: -502; Region: promoter
- AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

TTTACCGATG ATGATGATGA TTGGACAATG GCTACATAAA TGGAATACGC 
GGTAACTAAC ATGAGACTAC TGAGTAACAT GATGTACTCT GCTTCGGCGA 
TTTCGTTTCC AAGGGTTCGT CTGCATTGTA GTATTCCGAC AGAGCTATCC 
TGCCGGAGAA ACCCATTCCG ACAGAGCAAT CAGCCCGTCC AAGTCCCTTC 
TCCGAAGCTC GCTTGTTTCG ACGGAGTCCT AACTGAAGAT TTTCAACGGC 
TGGACGTCAG CGAAAACAAC TCTCCAGTCG AAGCCTTTGC CTACGTTCTC 
GAGCTTTGTG GTAAACGTAG AGCTGTCTCA CAAGGTCGGC AGCTGCATTC 
GCGCATTTTC AAGACTTTCC CCTCTTTCGA ATTAGATTTT TTGGCCGGCA 
AGCT

AT3G63360.1

Model type: Protein coding
Short Description: defensin-related
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63370.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a chloroplast RNA editing factor.
Computational Description: ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link: InterPro Scan - TAIR