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13-0469-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30343013 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-0469-1 - 5-prime edge 
    AACGCAATGA CAACTCACAG TATCTTCAGG CCGATAATAC CATCGAAAGC 
    GACAATACGG GACCCCATCA TCAGCTTCAA AGAGCTCGAT AACTTTTGCA 
    ATGAATTTCA GCTTCCCTGG TAGACCCTGC ATGGTAATAA TGACATACGG 
    TTTACCAACA TAACATCACA ACATGGTAAT GACGTAAGGA TCGATATGTG 
    TGTGTACCAT AACAATGATC GGTGTTAATT TCAACAATGA TTGACATTAA 
    CCATGGAAAC AAGAAAAGTT TCAACGATGA TTGACAGTAA CCATGGAAAG 
    TGTACCACGT AACATCTCAA GAAAACAGAA AGCGTAGCAA CATAAAATGT 
    AAACACAGAT TGACAAAAAC NATACCGTGA CATAGACATC GNCGTTTANG 
    TTGATGAGAA CTCCATCAAC CAAAGCTNNN ANNCCGGGNN GNNNNCNACN 
    CNNGCNNNNN TNNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30343129 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-0469-1 - 3-prime edge 
    ACTNNANGGG GCNNGGCNTG ATAANCANCC ATGNCCGTCN ACCANATCGN 
    NCGGTNTNNN GGATAAATNN ANCAAAAANA TCCCNGGCCT TGNNCNACCN 
    AGNGACANTG TGGNNGNCAG GTGATGAGAA TGACAATNCT CTCACCTGCA 
    TNTGGTCAAA AGTNAACATC NNTAAANTNC NATTACNTAA GGTATAATAA 
    CACTATATGA TNTCAATTGG CACAGTCTAT GAACCGTTTG GTCTTTTGCT 
    TCGTATGAAT GTTTACACTN ATTACNACAG ATTACCTCCA GAATCGAGCN 
    AAGGGTTATT CCTNCTTGNG ATTACTACTA CCATATGAAG TACGAAGTTC 
    CTNATCTCAA CTTTACAATN GCTAATGATG GNANNGTNTN GNTNTNCCTT 
    ANGGNNTGNG GNNTTAATNA GCTNGCTTTN AANCTGGTGT NGNCCGTGNN 
    GGNGCNCCAT NCNTAGNCTN ATNATTGTTN TATNCGNNCA NGNNCACCTN 
    ANATGAANNG GTANGNNACA AGNNNNCAAG GAGNNGNGCN NNAAATNNAA 
    NANCCTCCNC NNCNANNNGN GNNGNCCATA ACNGATNNCN NNCAAACNNC 
    CCCCCNNNAA ANATANANNN GATNNATNNT TNGNNNNNNA AAAATTNAAT 
    ACTANAACNA TTNCNAAAAN NGAGTTAAAN ACNNANTTTN CNNGTNNNAC 
    CNNCGN

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR