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13-0536-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25348574 [Map]; Strand: w
      • AT5G63190.1 - [+] show detail - MA3 domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
      • AT5G63190.2 - [+] show detail - MA3 domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
      • AT5G63195.1 - [+] show detail - other RNA
        Distance: -188; Region: promoter
      • AT5G63200.1 - [+] show detail - tetratricopeptide repeat (TPR)-containing protein
        Distance: -437; Region: promoter
    Flanking Genome Sequence: 13-0536-1 - 3-prime edge 
    TATGTAGATA GTGAGGAAAG TATCGTAAGC ACAAACACAA GAAACTGATA 
    AGAGAACCAC TAATCACTGA GTTGCAGAAA TCCCAAACTC GGGAAGGATC

AT5G63190.1

Model type
Protein coding
Short Description
MA3 domain-containing protein
Computational Description
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63190.2

Model type
Protein coding
Short Description
MA3 domain-containing protein
Computational Description
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63195.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G63190
Link
InterPro Scan - TAIR

AT5G63200.1

Model type
Protein coding
Short Description
tetratricopeptide repeat (TPR)-containing protein
Computational Description
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 18351 Blast hits to 10064 proteins in 1197 species: Archae - 736; Bacteria - 8120; Metazoa - 2665; Fungi - 514; Plants - 588; Viruses - 0; Other Eukaryotes - 5728 (source: NCBI BLink).
Link
InterPro Scan - TAIR