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13-0539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10831617 [Map]; Strand: c
      • AT2G25450.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0539-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACT TACACGTCTA TCTTTCTTTC CTTTGTATAC 
    CAAAAAATAT AAAATAAAAA ACACTATGGC GGAAAACTAC GACCGTGCCA 
    GTGAGTTAAA AGCATTCGAC GAGATGAAGA TTGGCGTGAA AGGACTCGTC 
    GACGCCGGAG TCACAAAAGT CCCGCGCATT TTCCATAACC CGCATGTTAA 
    CGTAGCAAAC CCTAAGCCTA CATCGACGGT GGTGATGATT CCAACAATCG 
    ATCTAGGTGG CGTGTTCGAA TCCACGGTCG TGCGAGAGAG TGTAGTTGCG 
    AAGGTTAAAG ACGCAATGGA GAAGTTTGGA TTTTTCCAGG CGATTAACCA 
    TGGGGTTCCA CTTGATGTGA TGGAGAAGAT GATAAATGGT ATTCGTCGGT 
    TTCACGACCA AGATCCAGAA GTGAGGAAAA TGTTCTATAC CCGAGACAAA 
    ACCAAAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10831629 [Map]; Strand: c
      • AT2G25450.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0539-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGT 
    CTTAGGCCTC TCGATATATA TAACAAAACA AAATGAATTG GTGTGTGGAT 
    AATTTCAATT TCAATAACTA AATAATCACA TTATCTTTGC TATAATATTG 
    TTTGATGTTG ATATGTTATA AGAAAGAGAG ACGTGTAAGT CTCTTAGATT 
    AATAAATATT TATTAGCT

AT2G25450.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein whose sequence is similar to ACC oxidase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 7865 Blast hits to 7837 proteins in 966 species: Archae - 0; Bacteria - 1060; Metazoa - 82; Fungi - 676; Plants - 4824; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
Link
InterPro Scan - TAIR