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13-0618-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3791539 [Map]; Strand: w
      • AT1G11280.1 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -727; Region: promoter
      • AT1G11280.2 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -663; Region: promoter
      • AT1G11280.3 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -663; Region: promoter
      • AT1G11280.4 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -727; Region: promoter
      • AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0618-1 - 5-prime edge 
    CGCACGAACA GGCACCGTTT TTGAAATGGT GAAACCGTTG CATGTCTCGT 
    ACTACAATTT CCCGTCCGGT CACAAGGGAA ATGTACTTTG TAGCATTGTG 
    ACAGTCAGCA CAAACCCGCA GGTTCTTTCT TACGTGAATA GTTGTACCTG 
    CAGTTGTATT CAGCAATCCA AAAGATATAG CCAGCTTCTC ACTGTGGGTA 
    CTCAGCAGTT GCTCCTTAAC ATCATTTTCC ACACCGAGGA CTAAATTCGT 
    GTCAGGAACA TAACCAGCTT CTTTGATGTG GCATATCAGC TTCTCAAGAA 
    ACGCATAAAT CTTCTTGGAA TCGGGATGGG CTGTGCTTCC AGAGAAGAAG 
    CTATGCACCT CGTTCTTTAT CTCCACCATA CTGCAGCCAG GAGTTTTGCG 
    CANACCCTGT CTCAACATTG AAACTCTCAC TTGTCCCACT TTTTCCCACA 
    TTGAAGCTGC ACGATATATG TTTGCAAGAA GCACATGATA CCCACCATCA 
    TCCGGGTTCA ACTCAAACAA TCTCTCTGCT GCTTTCTCAG CGAAATTCAC 
    ATTTTTATGA ATCTGGCAAG CACCTAACAT GGCACCATAT ACATTTACAG 
    CCGGCTTAAC GGGCATCTGG ATAATAAAGT CCCATGCTTN ATTCAACCGT 
    CCAAATCGAC CTAAANATCN ACCATGGCTC CATANTGGNC CATTGACGGN 
    NCTATGCTGN ANTTTTCCTT NATNATAAAA AANACTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3791423 [Map]; Strand: w
      • AT1G11280.1 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -611; Region: promoter
      • AT1G11280.2 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -547; Region: promoter
      • AT1G11280.3 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -547; Region: promoter
      • AT1G11280.4 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -611; Region: promoter
    Flanking Genome Sequence: 13-0618-1 - 3-prime edge 
    TTCGTGCGGA GATTACTGGT GACATGACCC TCCACCGAAA ACATTGATGA 
    GCATTATATA TCCGGGAGAG AAAACTAATT TGAGGAATAA CAAGACCTGG 
    TCTGAAGTAG AAGCCTTTGT AGAGAGCTAC AATTTGCNTG TATCATAAAC 
    AAGGTTTAAG CNTGATCACT ACGAATAGAG AGCTACAATA TGTGAGCGAA 
    GTCTCGTTTG CAAGCGTCCA AGTAAAAATT TATTCATTTT TGCAGCTCTG 
    TTTTTCCTTT CTTTCCCAGT ACATATGAAA GCTGAAAAGT GTTGTTGTGG 
    AATTGGTAGC GGAAAAAAAA TTATTTCTTG CTACAGAGAG TACAAAAATA 
    GAAAAATTCA AATCATTAAG ATATGTTATG TAGTGTGAGA CAAAGGCTTA 
    TTTTGGACAG GGTTGATGTA AGATGGAGTT TTTAAATTAG AATAAAGTAT 
    TACAAATTTT TTATATGGTA ACACACCTAA GGACAANATT GCATCTTCTT 
    CATCATTTCG GTTTATTATA ATGCCTATTC AAAGAACGAG GTGTCAAATA 
    TAAAACAATG CTATATCTTA TGGGTAATAA CATTATACGA TACATCTAGA 
    GGAGTCATTG TTTTCAGTTT TTCAAAACAA AATTTTATTC ATACATTCAG 
    ATCTGAAGGA GAACTCTTTT GAACACATGG GAATACACTT GGGAGAGATT 
    GGTATTGTTC TCTTTCCTTG GTTTCTGNGG NTAAGTTTAT TCCTAGNTGT 
    GGCTATGC

AT1G11280.1

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104; Bacteria - 13409; Metazoa - 44077; Fungi - 9917; Plants - 34701; Viruses - 420; Other Eukaryotes - 17362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11280.2

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 119975 Blast hits to 118187 proteins in 4400 species: Archae - 104; Bacteria - 13364; Metazoa - 44144; Fungi - 9898; Plants - 34683; Viruses - 420; Other Eukaryotes - 17362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11280.3

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 119306 Blast hits to 117553 proteins in 4294 species: Archae - 104; Bacteria - 13114; Metazoa - 43962; Fungi - 9889; Plants - 34469; Viruses - 418; Other Eukaryotes - 17350 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11280.4

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11290.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational Description
CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Link
InterPro Scan - TAIR