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13-0695-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19889406 [Map]; Strand: w
      • AT1G53310.3 - [+] show detail - phosphoenolpyruvate carboxylase 1
        Distance: -1124; Region: intergenic
      • AT1G53320.1 - [+] show detail - tubby like protein 7
        Distance: 1608; Region: intergenic
    Flanking Genome Sequence: 13-0695-1 - 5-prime edge 
    CATGTATGTG ATGTGATGTC ACGTTATGAA TATTTTACAT TGGTCGACTC 
    CAATTATTCA AAAATTGGAT ATCTTCATAT GTGCTAATGG AATATTCGGA 
    TAATTTGAAA TGTCTTTATT ATAACACAAG TCAACAGTCG ACAGACGACA 
    GGCATGAGTG ATACAGTCTA ATTGTTGGAA TATTAGGTAC TCACTTTTCT 
    AGTTTTCTTT AATATACTGC AAAATTTATT AATTTCAGCG AATGATCACA 
    CATTTTTTTC TTTTCACCAT CACATAAAAT TCTTTTGGAC TATAAAATAT 
    ATAGTGATAT GTATTGGGTA CATACATTTA TATAAAACAA AAAATTTACT 
    GCAAAAAAAA ACTAANAACT AAACNCCATA AATCCAAAAT CTAAAAACAA 
    ATTAANAAAC TACTGCCATT TCAAAGCCTT AACTTTGTCA AATGATATAT 
    ATGAAGTAAA AACAAAAAAA AAAAGNTAAA AAAAACNGGA NCCTNNAATA 
    AAAATTTCCN NCCCGGGNCN GNAANNCNCC GGGCCCCTTT TAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19889290 [Map]; Strand: w
      • AT1G53310.2 - [+] show detail - phosphoenolpyruvate carboxylase 1
        Distance: -921; Region: promoter
    Flanking Genome Sequence: 13-0695-1 - 3-prime edge 
    CATACATGTA CGACTTTGTC ACTTACCAAA AATGATCTAG TTATGATAAT 
    AACATCATCA CATGAGTAAG AATGATAAGG CATGATCTAA TCAGCATCAT 
    ATACCGCTAC TTTATTTACT ATCACATTTT CGTTCACAAG AGTAATATTA 
    TATTTGATTT TATATATGTC TAAAAATTTA TCGTAGACTG CCGATTTTAG 
    ATTTTGGGAG GTTAGAAGAA CTAATAAAAC CGAAAGAAAT AGATGATGGT 
    CGGTTAAATA CTTAAGTCCT TTATAAGAAA GAAAAATTAA AAGTCAACTT 
    TATCGCTGAA AGTGAAAGTT AGGTTGAAAG TTCAGAGATT TATTCATCAA 
    CTTCCGTGCA TTGACACATG CTCTTCTCTA CATTCGCTCA CGTGAATTTT 
    AGAACAACAA ATTATTTTAC AAACACTATA ATCTTCCGGT AATTTAACCA 
    CAATAAAGAG ATAAATAATC TTTATATTAA ATCGATCGAA TT

AT1G53310.2

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxylase 1
Curator Summary
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
Computational Description
phosphoenolpyruvate carboxylase 1 (PPC1); FUNCTIONS IN: protein binding, phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 3 (TAIR:AT3G14940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53310.3

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxylase 1
Curator Summary
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
Computational Description
phosphoenolpyruvate carboxylase 1 (PPC1); FUNCTIONS IN: protein binding, phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 3 (TAIR:AT3G14940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53320.1

Model type
Protein coding
Short Description
tubby like protein 7
Curator Summary
Member of TLP family
Computational Description
tubby like protein 7 (TLP7); CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 3 (TAIR:AT2G47900.2); Has 954 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 19; Plants - 468; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR