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13-0701-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2920787 [Map]; Strand: w
      • AT3G09505.1 - [+] show detail - pre-tRNA
        Distance: -2301; Region: intergenic
      • AT3G09510.1 - [+] show detail - Ribonuclease H-like superfamily protein
        Distance: -1017; Region: intergenic
    Flanking Genome Sequence: 13-0701-1 - 5-prime edge 
    CTTTAAAAAA CTACACAAAA TCGGTTATTC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATT CATNTATTTA CAAATAAGTA ATTTAACTAT 
    AGTTAATTTA GTAGGTGTAT GGATGGGATT GGATTTAAGT AGTGATGTGA 
    TCAAATACTA CTATAAACAC TTTTTTGTTG TTGCCCAAAT TCTACCAAAA 
    TCAAAATTTT CTTACAAAAT ATGATTACTT GGTTTATCTT ACAACTTATA 
    CAAATTTAAT TTATTACATA TATCTCTTGT TTGTAATGAT GTTCATTTAC 
    TAATAATATT ATGTTATATT ACATATATAC TGTTTGTTTA CATCACCTTA 
    AATCGTGTAT AGCTCTAATT AAACATTTTA GGTCAAAACA GTTTTAGACT 
    ATATAAACAT AGACTAATCA CCGTTTGATT AGTCTCTAAC ACTGTTTCTA 
    GCATTTATTT TAAAACATAG TTATATTATA TATGTAATGC AAAAAAGTTG 
    TAGGAACACG AATAGCTAAG ACGGGAATCT CACATTCGTT CAATATGAAA 
    ATACAACATA TGTGTGTGCA TATCTTTCAA ATCTGATAAA GGAGGGATGG 
    AAATTTANTA AAAACGAAAG AGATTTTGTT TGTGTTTTGN GTTTAGAAAT 
    CATAGAAATC TCTCGTAGAA ACTTACTAAA TTCTTTTAAA GCAGGCAAGC 
    GTCAAACATC CATAATTTTG TTGAATGGGG GACGCGATCC ATATTGACCT 
    TTTCATTTAA TCATTTNACT TTCCAATNAA NAANTTAATT TTTGGCAAAC 
    ATATTGGTTG AACNANCAN

AT3G09505.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT3G09510.1

Model type
Protein coding
Short Description
Ribonuclease H-like superfamily protein
Computational Description
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 1469 Blast hits to 1446 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1468; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR