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13-0726-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3867683 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -714; Region: promoter
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -714; Region: promoter
      • AT1G11482.1 - [+] show detail
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 13-0726-1 - 5-prime edge 
    CNTGAAANAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA TTTCCTTCTT TTTTTTTTTT TTTTTTTTTT 
    TTTTTTTTTT TTTNAAAAAA AAANTTTTTN NNNAAAAAAA AANNNGGGGG 
    GGGGGNNNNN NNNGGGGGNA AAAAAAAAAA NNNNNNNNNG GGGGGNNGGG 
    GGGNAANGAG AGNGGGNANN NGNGGNGGGG GNGGGNGGGN ANNNANAAGG 
    GANGAGGNGA GGGNNNNGGN ANGANGNGAG NGANNAAANN NNGGNGGGNG 
    NGGGGNNGAA GAAAANAAAA ANAAGAGGNG GGGGGNGGNG GGGGNGGGGN 
    GNNNNGAGNN NNNANNGAGN GAGGNGGNGG GGCAANGNNN GNNGAGGNNG 
    ANNGAANACN ANNAANGGNN NNNGAGGGGG AGGGANGNGG ANGGGGNGGG 
    ANGGNNGGNG NGNNGGGGNG GANANGAGGG GGNAGANGNN GNNNGGGNNN 
    NNNNGNNGGA GGGNGGGGGG NGNGANGGAA GANGGAGNNG AGGGGNGGGA 
    GGGGGAGAAG GGNGNNNAAG NGGGNGNAAN GGGANGGNGA GGNGNGNGGG 
    GNNGNGAGAG GGGGNNAGNA NGAGANGGNG GGGNNGGGNG GNCGGNGNGN 
    ANGGAGAGGG AGNAGACAGN NANGAAAAAN GNGGGGNAGN NAGNGGNGGG 
    NGGNGGGAGG NGGAGGGGGA NANGGNGGGG GGNGANGGGA GGNGGGGAGA 
    AGANANAAGG GGGGGAGAGA NGAGGANGGA AGGNAGGGAN AGAGGANAGA 
    ANNNANAGAG GNGAGGNGGG GNANANGAAG AGGCGGGAGG GGAAGGGAAN 
    GNGNNNNANG NNNNAGANG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3867681 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -712; Region: promoter
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -712; Region: promoter
      • AT1G11482.1 - [+] show detail
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 13-0726-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    ATTGCTGTTT ACACTCGAGA CATTGGAGAT CTCTGCATTT TCCTCTCAAA 
    ATCTGAATCT TTCTGTGTCT CTGCAACTAG TAGCTACAAA TCCGTTCCTT 
    CCCTAGTCCG TAACCACGTC TATGTCCAGG CTTACGACGA GTATGGATTC 
    ATGGATATCG CCAAGCCTTT TGACGATTCC TGGGTCATTC CTGCCTCACC 
    TGATGCGAAC CCGAATCCTT TCTATATTCC ACCTCAAACT ATAGAATATA 
    CTTTATCTAC GATGCACCCG GATCTATGAA TTTTTTACTT TGTCGTTTCC 
    CGTTACTAGT TTTCGTACCC GTTTCAATGC TACTTACTCA GGTAGTTCTA 
    GTAGCAATAT ATGTATTATT GTTCCAATTA ATAAATTCAA CTCGCTTAAA 
    AACTAAAACT CAACTAAACA TTTTTCTATA ATACTTTTGT CTAATCCTAG 
    CAATACACAC TCCATTTACT AATATATACA TTACCTATAA ACTGTGTTGT 
    ATACTAATAC CCCATATTCA CCAGAAGACT TATAGAGCAT TTCAGTTTGG 
    TTCCGTGTAT ACCACATCAT CAGCCGAATC AACAAGTGTA AAAATCCACG 
    TGTGCATCAG ACTGCCACGT AATCAATCGT AAATAGGTTG ATTTCAATAG 
    GGATAGNTTC GNATTTTAAT TCTTTTTAGG GGCAAAAAAA CATTTTTCCG 
    TCCATTGAGG AAGCAAGGTT TTCGATNTTA ATAAATNCCA NANANANANA 
    GAGGAAAANG AGAA

AT1G11480.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11480.2

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11482.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR