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13-0777-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3564478 [Map]; Strand: c
      • AT1G10720.1 - [+] show detail - BSD domain-containing protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G10730.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: -985; Region: promoter
    Flanking Genome Sequence: 13-0777-1 - 5-prime edge 
    CACCCAAAAG ACTTCCACGA TTTGACTCAG CACACAGTAC TTATGTTCAA 
    TTCTATTGAT TCGATCTCGT GAGGCAGGGC AAAGCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3564542 [Map]; Strand: c
      • AT1G10720.1 - [+] show detail - BSD domain-containing protein
        Distance: 0; Region: exon3 (3UTR)
      • AT1G10730.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: -921; Region: promoter
    Flanking Genome Sequence: 13-0777-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGTTTGGGTG AGTTTGATTG TTTTGTGGAT TTATGATGTT TGCTCTCAAA 
    GAGAAGGAAG AAAGAAAGAA AAAGGTTTTG ATTGAAACAT GTACAGAAGA 
    TTTACTTTGA CACTGCAATT TCATTGTAAT GTTCTCTCTC GCCAAATGTA 
    ATGAAATATT GAAAAGCACT ATTTCATTCG CGTGGAACTT AAAAGAAATT 
    GATAGAGAAT GGCGCAAGTG AATT

AT1G10720.1

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 1569 Blast hits to 1461 proteins in 180 species: Archae - 0; Bacteria - 14; Metazoa - 740; Fungi - 179; Plants - 264; Viruses - 21; Other Eukaryotes - 351 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10730.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Computational Description
Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).
Link
InterPro Scan - TAIR