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13-0779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9805563 [Map]; Strand: w
      • AT1G28110.2 - [+] show detail - serine carboxypeptidase-like 45
        Distance: 0; Region: exon4 (CDS)
      • AT1G28110.1 - [+] show detail - serine carboxypeptidase-like 45
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-0779-1 - 5-prime edge 
    CTTTGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CCATCAATTT GAGAAACCAT CTTTGCAAGA 
    ACACAAGGTT GTCTCTTGCT GAAGTGGAAA TAAAGAAGAC AAAAGAGAGT 
    TTGAGAGTGT TAAAGACAAA CAGAAGGAAA CAAGAAGAAG AGAATAATAA 
    TCTCAGATGT GATCTGCACA AAAGGTTGAA TT

AT1G28110.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 45
Computational Description
serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 3718 Blast hits to 3657 proteins in 439 species: Archae - 0; Bacteria - 354; Metazoa - 639; Fungi - 854; Plants - 1450; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28110.2

Model type
Protein coding
Short Description
serine carboxypeptidase-like 45
Computational Description
serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR