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13-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13072391 [Map]; Strand: c
      • AT4G25620.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -2712; Region: intergenic
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: -1742; Region: intergenic
    Flanking Genome Sequence: 13-0797-1 - 5-prime edge 
    GGGATAAACT NACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTCTTTTAA AGAGTAGATC TTNAATNTAT AGTTCGTCAA 
    GTAAAGATAA ATCCTCCTAT TTTAGTAGTC ACATGTTTTA TTGCTAGGGC 
    TGCTGCTTTA TTTGTCATAT TACTTGCGAT CGAGACAATA GAGTAGAGAC 
    CGACGATGTA TGTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13246658 [Map]; Strand: c
      • AT4G26140.1 - [+] show detail - beta-galactosidase 12
        Distance: 0; Region: intron5 (CDS)
      • AT4G26140.2 - [+] show detail - beta-galactosidase 12
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 13-0797-1 - 3-prime edge 
    TATTGGTCCA TACTCATTCT CTATCTGCCC ATTTAAAACA TACAATGTAA 
    ATATCATCTT TTTTTCTTTC AAAAACAAAG ATTCATTTGG ATATACACTA 
    CTGACATTAT GTACTAACTA ATACGAAAAC AAACAAACCT GTGACAGAAT 
    GATGGGTCCT CCTTGAGTCT CAAATAATTT TTCTTCTTTC ATCATCCTCA 
    CAATCTTCTC AGTGAATTTT TGCATTGCAG CCTTTTCATT ATCACATCAA 
    TTTTTTGTTA GTTATCCCAA AAAATGGAAA CTTTATAACA TATGAGAAGA 
    AAGTTAGATA AGTTTTATAC CTTGAAAGGT TCATTGTCGG TCCTAAATAC 
    CATACCGGGA ACATATTTGA GCCAAACAGG AAACCCTCTG CAAACCATTA 
    ATTTAAACAT ATTTCAATGA ATAATTATAT CAAAAAGAAA GAGATTCAAC 
    AAATTTAATC TGTATTAATT AGACCATATA GTTTACCCAA AGTTCCATTC 
    AGCGCAAACA TAGGGACCAA TCCTGAGATG AACGTAAAGA CCAGCTTGTT 
    GTACCACCTT GATGAACTTA ACTAGATCAT ATCTGTCCTC AAAATAATAC 
    TAAAGCAGAA ATAAAAGTTA TAGAATTAGT TAAAGAATT

AT4G25620.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25630.1

Model type
Protein coding
Short Description
fibrillarin 2
Curator Summary
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
Computational Description
fibrillarin 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26140.1

Model type
Protein coding
Short Description
beta-galactosidase 12
Curator Summary
putative beta-galactosidase
Computational Description
beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2223 Blast hits to 2064 proteins in 473 species: Archae - 15; Bacteria - 965; Metazoa - 380; Fungi - 213; Plants - 581; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26140.2

Model type
Protein coding
Short Description
beta-galactosidase 12
Curator Summary
putative beta-galactosidase
Computational Description
beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR