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Mutant Lines
13-0828-1

13-0828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 13785 [Map]; Strand: c
- AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -426; Region: promoter
- AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
  Distance: -842; Region: promoter

GTTCCTTCTC CGTCGTCCAC AAGAGCCGCC ACGTAGCAGA TAGAGAGTCG 
TCTGTGGTGA TGGAGCTGCG CCCGATAACC GTCATGGATT CGATGGCGTT 
CACGATTTCA TCTCGCTTCT TGGGGTCTTT CTGGGTTCTC AGACCTCGAT 
CCTCCTCGGA GATCAGCTCA AGCAGCTTCC TCTTGGCTCG CTGTGCTGGA 
TTCGCGAAGA TCGAGCAGCT TGTTCGAAAA CCGGCACGAC GAGTGCGGCG 
GAGTGGAGGA GAACATGCCG ACAGCGAGAG CGCGAGCGCC ATGTTTGCAA 
ATTGCAATTT CCATGGTTAG GTTGTTGCAC GAAGAAGAAG AAGAGATACT 
CTGTTATTTG GGTTTCTTTT CTAAAAAGCC CATTTGGGTT TTATTTGCTT 
TATCTCATGA GTCTAAGCCC AAGCCCAAGG AAATAGCTTG CACGTGCGCG 
TCACGTGTCT ACGATAAAAC CCCAGCAACG GCGAGCGGCT TTGCCTTGCT 
CATTCAACCT CGCTCGTCGT CGTCGTCGTC TCCACTTCGA TTTTTCAATC 
AGTAATATTG GTGGTTCANA GATGATGATG ATGAATCTTT TAAGGAGATC 
AGCGATAGCC ATCGGCCGCC AATCAAAATC NAAACTGGCG TCGTTTTCCT 
NCGCTACACA ACCTTGTTCC GGAATCCCA

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 13857 [Map]; Strand: c
  - AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -498; Region: promoter
  - AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
    Distance: -770; Region: promoter
Flanking Genome Sequence: 13-0828-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
ACAGTTGTTC ATCATAGAAA AGGCAGGCTT GTTTGGGACG ACCGCCGGAG 
ACGTTTTGCA GGTGATCGAT GTGAATAAAC GGATC
```

AT4G00026.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00030.1

Model type: Protein coding
Short Description: Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description: Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00040.1

Model type: Protein coding
Short Description: Chalcone and stilbene synthase family protein
Computational Description: Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR