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13-0840-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4156918 [Map]; Strand: w
      • AT1G12240.1 - [+] show detail - Glycosyl hydrolases family 32 protein
        Distance: 0; Region: exon5 (CDS)
      • AT1G12244.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -736; Region: promoter
    Flanking Genome Sequence: 13-0840-1 - 5-prime edge 
    GTGCTTTAGG GCCATTCGGA TTCTCGGTAC TTGCCACAGA GAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4156802 [Map]; Strand: w
      • AT1G12240.1 - [+] show detail - Glycosyl hydrolases family 32 protein
        Distance: 0; Region: exon5 (CDS)
      • AT1G12244.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -852; Region: promoter
    Flanking Genome Sequence: 13-0840-1 - 3-prime edge 
    TAAAGCACCA CGGACGGTGG AGCCTCCGCT TTTTTCGCAG CTAAATTCCT 
    CGGCTTCAGC CACTACCGAA GCGTTTCCGA GGATTTTGTC TAGAGATTCT 
    TTGTTAATCT CGAATT

AT1G12240.1

Model type
Protein coding
Short Description
Glycosyl hydrolases family 32 protein
Computational Description
ATBETAFRUCT4; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3357 (InterPro:IPR021792), Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 32 protein (TAIR:AT1G62660.1); Has 4142 Blast hits to 4085 proteins in 1233 species: Archae - 18; Bacteria - 2511; Metazoa - 93; Fungi - 293; Plants - 1044; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12244.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR