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13-0974-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19073604 [Map]; Strand: c
      • AT3G51375.1 - [+] show detail - MIR171A; miRNA
        Distance: 63; Region: intergenic
      • AT3G51380.1 - [+] show detail - IQ-domain 20
        Distance: 432; Region: intergenic
    Flanking Genome Sequence: 13-0974-1 - 3-prime edge 
    CTCNGANCNA NTCGGGNCTA TGAGGACNCG NGGNNCGATN CNNCTCTNNN 
    NGTNGAAATG GAGACAAGTA CTTGTAACTT CTTTGTTGTT ATATTGTTTA 
    CCTATAGGCT GATGTCATAA ACTCTTTTGA TCTTGTTTCT AACTTCCAGA 
    TTCTTGAAAA ATCAAGTCGT GTGTGTGTCT CCATGGAAGC CTTTTCCATT 
    TCTTCCTTTC CAAGGTATCC CCTTAATCAG CTTCCTTGCC AAGTATAAAT 
    CTGTTGTAGG GTTTTGCTTC AAATAATCTA TATGGATC

AT3G51375.1

Model type
miRNA
Short Description
MIR171A; miRNA
Curator Summary
Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGCGCCAAUAUC
Link
InterPro Scan - TAIR

AT3G51380.1

Model type
Protein coding
Short Description
IQ-domain 20
Computational Description
IQ-domain 20 (IQD20); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 21 (TAIR:AT3G49260.3); Has 730 Blast hits to 729 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 3; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR