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13-1133-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14317806 [Map]; Strand: w
      • AT3G42160.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 2172; Region: intergenic
      • AT3G42170.1 - [+] show detail - BED zinc finger ;hAT family dimerisation domain
        Distance: -3146; Region: intergenic
    Flanking Genome Sequence: 13-1133-1 - 5-prime edge 
    GGTGGANCNA NNNAGCNNNA CGNCCAAGAC TAACGTGANC GTTNCGCAGG 
    NNAAGAAGNC TANGGNCGNA ACGTNNAGCN CATAGCNTTA ACTAAAGTAC 
    TTAACTGAAA CATTAAATTA AAGTCATAAA CTGAAAACAT GAATCTCAAA 
    CTCAAGATGT CTCTTCATCA ATATCAAGCT

AT3G42160.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G11370.1); Has 420 Blast hits to 420 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G42170.1

Model type
Protein coding
Short Description
BED zinc finger ;hAT family dimerisation domain
Curator Summary
transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
Computational Description
BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR