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13-1150-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10639380 [Map]; Strand: w
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1150-1 - 5-prime edge
    TTCATAATGG GCCTTGATGA TTCAAGATTT GGTGGNCTTT GTACAAGTCT 
    CATTAACATG GATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10639264 [Map]; Strand: w
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1150-1 - 3-prime edge
    ATTATGAACT GGTGAAGCGT CTCATTATCT CATTCCTTGA CAATTGCAGA 
    CATTATCGAT CCATGAGCAC AAACCGCACT TGCTTGATAA TTCTTCAACT
    CATCCCACAA ATTACACAAT CTTCCATAGT AATCGATTAC NTGTTTGTCC
    ATCTTGATGA CATGAGGCAA GTTGAGCTTT GATGTAATGA ACCCGAACAT
    TGTTGCTCAC CGAGAAACGT TGTTGTAGTT CGTCCCATAG AAGATGTGCA
    TCGGAAATAA ACGTCACAGT AGATTTAACT TTGGGTTCAA TCGAAGCCCG
    AATCCAACCT ACGATCATTG AATT

AT5G28635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR