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13-1188-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1483288 [Map]; Strand: w
      • AT1G05140.1 - [+] show detail - Peptidase M50 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1188-1 - 3-prime edge 
    ACGAGAAGCA GCAGAGAAAG ACTTAACATC AGGAACAAGA ACTCCAGGAA 
    AAGATTCTTG AACTGGTAAT CCAACAGATA CCACTTGAGT AAAGATTATA 
    GCGTAAGCGA AGATAACGTT AGCGACAATT CCAGCTGAAA CAACAATCAC 
    TCTATCCAAA ATCGGTCGAT TCTTGAGAAG ATTTCTGTCG TCTACAGGGA 
    TATCACTGTC GGGATCATTA TCAGGGAATC CAACAAATCC ACCTAATGGA 
    AAGGCCCTAA GAGAGTATTC GACATTGTTG GAATTGAATT TAGCTAGAAT 
    CGGACCAAAC CCTATCGCGA ATTTACTCAC ACGGATACCT TGAAGAGAAG 
    CAGCTAAAAA GTGACCGGTC TCGTGTACGA CGATGATCGC AGTGAGAACA 
    GCGGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1483404 [Map]; Strand: w
      • AT1G05140.1 - [+] show detail - Peptidase M50 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1188-1 - 5-prime edge 
    CTTCTCGTGA TGGATTGCTT CCGGGAGATG TTATCTTAGC CGTTGATGGT 
    ACTGAGCTAT CTAATTCCGG TTCTGATTCG GTTTCTAAAG TTGTTGATGT 
    TGTGAAGAGG AATCCGGAGC ACAATGTCTT GCTCAGGATC GAAAGAGGGA 
    AGGAGAGTTT CGAAATCCGG ATCACGCCGG ATAAGAGTTT CGATGGAACG 
    GGGAAAATCG GTGTTCAGTT ATCACCGAAT GTTAGATTCG GTAAGGTGAG 
    ACCGAAGAAC ATACCGGAAA CTTTTAGTTT CGCCGGTAGA GAATT

AT1G05140.1

Model type
Protein coding
Short Description
Peptidase M50 family protein
Computational Description
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).
Link
InterPro Scan - TAIR