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13-1200-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3428529 [Map]; Strand: w
      • AT1G10430.1 - [+] show detail - protein phosphatase 2A-2
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-1200-1 - 5-prime edge 
    GNNTNTANGN NCNGCTGNNA ANACAAGACG CTCACTNNTA TAGATNTATG 
    AAGCCTCTGN TACANACTTT TTTCTATCAN TNACCTCAAC AACAGAAAAA 
    AATGATGTGT TTCTTTTTTT CTAGGGGAAA TTCGAACTCC ACTTAGAAAA 
    AAGAAGAGAA AAGGGCACAT CTACAATGAT ACATAGGCAA TAAAACTGGA 
    ACTTCAAAAA ATTATATATG GTCGGGACCA CAAAAAAAAA CAGAGAANTC 
    NCAAAAAATA ATCAGGGGTC TTCCGAGTAG TNTCAGGTTC AACTTGTCGA 
    GGAGCTGGAT CGAACTGGAG GAAGTTTNGC TCCATGTTCT CTCCTATCTC 
    TANAATGGCA GCCATGTTTC CACACCGGTA GCAATAGTTN GGNGCACTAA 
    ACACAGTCAC CACATTCTTA TCCTGTTNCC ATACAAAGGA NANATCAACG 
    ATTCAATCTG ANANANANAC TAATCATGCC GTAANAATGT TCATACCTGA 
    CACCAGTTAA AACCTTCCAT GACAAGTTGA TGCNCTCTTG ATATGAGACT 
    TAGTCCATTG TNGNGATTAA ATTGAGCTGC GATATCCTGT CCAAATGTNT 
    AACCAGCACC TCGNGGAGAT ATTCCCCATC CACATCGATC ATCAGGATCA 
    GACCATAATA AATCACACAT AGGTCCTTCG TGTGGAACCT ACAGATCACA 
    CATCATACAT AGTTCAAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3428414 [Map]; Strand: w
      • AT1G10417.1 - [+] show detail - unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Arch...
        Distance: -957; Region: promoter
      • AT1G10419.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1200-1 - 3-prime edge 
    CTAAATACCC CAGAATAAAG ACTTTGAAAA CTAAATGCAT TACAAACAAA 
    GACGCCAAAC CGAAGATTTC TACATATTTC CAATACCG

AT1G10417.1

Model type
Protein coding
Curator Summary
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.
Computational Description
unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10419.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT1G10419
Link
InterPro Scan - TAIR

AT1G10430.1

Model type
Protein coding
Short Description
protein phosphatase 2A-2
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-2 (PP2A-2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-2 (TAIR:AT1G59830.1); Has 6751 Blast hits to 6569 proteins in 471 species: Archae - 80; Bacteria - 183; Metazoa - 2378; Fungi - 1410; Plants - 970; Viruses - 5; Other Eukaryotes - 1725 (source: NCBI BLink).
Link
InterPro Scan - TAIR