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13-1212-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6675461 [Map]; Strand: c
      • AT1G19300.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -2808; Region: intergenic
      • AT1G19310.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 773; Region: intergenic
    Flanking Genome Sequence: 13-1212-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAT GAGACAATGA GACCCATTGT AAATTTTTAA 
    TTTGTTTCTC AGAGAGTTCA CACACACAGA TGCAATAATC TCCACTTCAT 
    CTGTTTCTAA TTAAAACTAT CCATTTATGT GCATACACTC ATGAACATGT 
    ATTAATAATA ATAACCCTCC CTTCATGCAC ACATGACACA TGCAACATGC 
    NTTATTTAAT ACTAGTATTA CGTTCGTTTC TATATTTTAT TAAATGTGTC 
    ATCAAAAGGC TGAAGCCATA TGCCTTCATG GCTTCATCGA TCATATTTTT 
    TCAAAGTTTC ATGATTTTCC ACCGGAATAA AATGAGCTAT ATATGTTGGT 
    CGCTAAATAT ACAATTCATA TATAGTCATA TTGTGAGAAT TATAATGATA 
    AAATGAAATG AGTTTAAATA TATGAAAGTA AAAAGAAGAA GGAAACCTCG 
    CATTCTCACA ATGCTTTAAG TCTCAGCACA CAATTCCTTC GAACCTTTTT 
    TTTTTTTTTT GGGNANCCCC NNTTNCNTTT NNNNNNNANN NGNGGGGGTT 
    TNAAAAAAAA AANNGGGGNC NNAAAAAAAA GGGGGGNTNT AAANNNAAAA 
    TTTTTGGGGG GANGGGNTTT TTNNAAANTT TTNCCNNNGG GNNNNNNNCC 
    CNANNNAAAA AANNNTGGGG GNGNNNAATN NNAGGGNAAN NNGGGNAAAA 
    AAN

AT1G19300.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.
Computational Description
PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
Link
InterPro Scan - TAIR