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13-1222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1483306 [Map]; Strand: w
      • AT1G05140.1 - [+] show detail - Peptidase M50 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1222-1 - 3-prime edge 
    GNTNGANGNA NCNCCNNGAG ANNTNCGTCN AGGAACNTCG AACCTTCAGG 
    AGGNCGATTC TTGAGACTGN NNATACAANA ATATACNACC TTGANGTGAA 
    GATNATANGC NGNAGCGGAA TATNACTGTT TTGCNNACAA NTGCCAGCTG 
    GANACAACAA ATCANTTNTA TCTCAAAATC CGGGCGANTC TTGAGAAGAT 
    CNCCTGTCGT NTACAGGGAT ATAACCTGTG CGGGATCATN ATCAGGGAAT 
    CCANCAAATC CACCTAATGG AAAGGCCCTA AGAGAGTATT CNACATNGTT 
    GGAATTGAAT TTANCTANAA TCGGACCAAA CCCTATCGCG AATTTACTCA 
    CACGGATACC TTGAAGAGAA GCAGCTAAAA AGTGACCGGT CTCGTGTACG 
    ACGATGATCG CAGNGAGAAC TGNGGAAGCT

AT1G05140.1

Model type
Protein coding
Short Description
Peptidase M50 family protein
Computational Description
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).
Link
InterPro Scan - TAIR