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13-1225-1

13-1225-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1379060 [Map]; Strand: w
  - AT1G04880.1 - [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
    Distance: 0; Region: intron1 (5UTR)
Flanking Genome Sequence: 13-1225-1 - 5-prime edge
```
CCCGCGAAGC AACAAACAAG AAGCAGCAAA AGCCCAGACG ACGAAAAAGA 
AGTGATGATG AAATAATATG AGAAGATTAA AAGAAAATGA AAGAAAGTTG 
TCACCTTTGC TAACCATTCA CCCTTGAATA TTCATAAAAA TGAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 1378944 [Map]; Strand: w
- AT1G04880.1 - [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
  Distance: 0; Region: intron1 (5UTR)

TTCGCGGGAA ACCCCAAAAA TGGTTTCTCT GTTGTATCGT CTATCGAGAA 
TCTATTCGTT GTTTGGTAAC AGAGAATTAA TGGCTTCTTT GAAGAAAGTT 
GTTGTTGGGC ATTGAATATC TCAATAGATG CCTGTAATGT ATTTGTTAAT 
ATGCCTCTTC GAGGGGTTTT CTTGGTTTAT GTTCCTTCGA ATCTCAGGCT 
AATATACGTT GCCGGCGCAA AAATTCCCTC TTTTTTGTCA GAGCGATAGC 
GAGAGAGAGA GATTGGTTGA AAAAGATGTG TCTTTGTTAT GATTCCTTAA 
AGTATGGTTG CTTTTGTAGC ACAAGTCCTT TTACATTTAA TGGCAATCTG 
TCGTATTCAG TTTTTTGTTC TGCATAGAAG AAACAGAGGG AAGAGAAGAA 
TT

AT1G04880.1

Model type: Protein coding
Short Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Computational Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink).
Link: InterPro Scan - TAIR