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13-1233-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3062729 [Map]; Strand: c
      • AT1G09483.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1000; Region: promoter
      • AT1G09486.1 - [+] show detail - pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functiona...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1233-1 - 3-prime edge
    CTCATCACAC CTTGACTGTT GCACATGCTC CACACGTACA TGTATCCTCT 
    TCCTTATAAT TCTGTGCTTA ATCTAAAACT CAACCCAAAA CTCAAAATTA
    GCTCTCCAAG AGATTCAACC TAAATGATAA ACATCAAAGT CAAAATGAAA
    ACATCACCTA AGAATCATAG TAGATTGATT GCAAATTATA CAAGTAGCAA
    AAGAAGGACC CAAGAAGAAA AGCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3062613 [Map]; Strand: c
      • AT1G09483.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -884; Region: promoter
      • AT1G09486.1 - [+] show detail - pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functiona...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-1233-1 - 5-prime edge
    GTGATGAGGA GTTTAATCTC AGGAAGAAGC AGAACGATGT GCTTAAGGCT 
    GCAACAGTCA AGGTGTGATG ATGAGTTTAG TCTCAGGAAG AAGCAAAACG
    ATGTGTTTAA GACTGCTGCT AAAGCTAGAC GTGAGACTAT TAGCACTAAG
    AGACAACCTA AAGGTCCTAA ACCTTGTTTC ATGGTTGAAG GTATGACCTT
    GGAGACTGTC ACTCCCATTC CCAATGTTGT CAACGATCTC AAAGGTGGCT
    ATTGAGTTGT TTCCATTTTT TTCATTCTCT TCTAAGAATT TTTGCACTTG
    CTTTGTTCTT TTTATGATTT TTTTGTATCA AACAAGACTG AATT

AT1G09483.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09470.1); Has 48 Blast hits to 48 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09486.1

Model type
Pseudogene
Computational Description
pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functional assignment; blastp match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}
Link
InterPro Scan - TAIR